miRNA display CGI


Results 21 - 40 of 53 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16129 5' -60.6 NC_004065.1 + 30589 0.66 0.798223
Target:  5'- cCGCG-GCGAGcGCCUCgUCcgcguuCCgAGGc -3'
miRNA:   3'- aGCGCaCGCUC-CGGAGgAGu-----GGgUCC- -5'
16129 5' -60.6 NC_004065.1 + 139897 0.67 0.789733
Target:  5'- -gGUGgccGCGGGGCCUCCggccggcggCGCCagCGGGu -3'
miRNA:   3'- agCGCa--CGCUCCGGAGGa--------GUGG--GUCC- -5'
16129 5' -60.6 NC_004065.1 + 80465 0.67 0.789733
Target:  5'- uUCGCG-GCGAGGgCUCCaacgGCCUucaaaAGGg -3'
miRNA:   3'- -AGCGCaCGCUCCgGAGGag--UGGG-----UCC- -5'
16129 5' -60.6 NC_004065.1 + 205648 0.67 0.781117
Target:  5'- aCGCGcaGCGAGGCCUUU--GCCCAc- -3'
miRNA:   3'- aGCGCa-CGCUCCGGAGGagUGGGUcc -5'
16129 5' -60.6 NC_004065.1 + 96589 0.67 0.781117
Target:  5'- aCGCGUgGCGAcGCUgcaCUC-CCCGGGa -3'
miRNA:   3'- aGCGCA-CGCUcCGGag-GAGuGGGUCC- -5'
16129 5' -60.6 NC_004065.1 + 27773 0.67 0.769743
Target:  5'- aCGC-UGCGccgccgucuggaGGGCCUCCugccccagcagacgUCGCCCAGc -3'
miRNA:   3'- aGCGcACGC------------UCCGGAGG--------------AGUGGGUCc -5'
16129 5' -60.6 NC_004065.1 + 126411 0.67 0.767092
Target:  5'- gCGCGUgguacgacuguucgaGCGGGGCCgcaUCCUCGgUCuGGg -3'
miRNA:   3'- aGCGCA---------------CGCUCCGG---AGGAGUgGGuCC- -5'
16129 5' -60.6 NC_004065.1 + 226489 0.67 0.763542
Target:  5'- cUGCGauucuuuCGAGGUCUCgCUCuCCCAGGc -3'
miRNA:   3'- aGCGCac-----GCUCCGGAG-GAGuGGGUCC- -5'
16129 5' -60.6 NC_004065.1 + 71627 0.67 0.754597
Target:  5'- uUCGUGUuCGAGGCgUUCUCACacguccgCGGGa -3'
miRNA:   3'- -AGCGCAcGCUCCGgAGGAGUGg------GUCC- -5'
16129 5' -60.6 NC_004065.1 + 118501 0.67 0.754597
Target:  5'- cUGCG-GUGGGGCC-UgUCGCUCGGGu -3'
miRNA:   3'- aGCGCaCGCUCCGGaGgAGUGGGUCC- -5'
16129 5' -60.6 NC_004065.1 + 97617 0.67 0.754597
Target:  5'- aCGUGUGCGAGGag-Ca-CAUCCAGGc -3'
miRNA:   3'- aGCGCACGCUCCggaGgaGUGGGUCC- -5'
16129 5' -60.6 NC_004065.1 + 58233 0.67 0.745556
Target:  5'- cCGCGcaCGaAGGgCUCCUCGCUgAGGa -3'
miRNA:   3'- aGCGCacGC-UCCgGAGGAGUGGgUCC- -5'
16129 5' -60.6 NC_004065.1 + 108737 0.68 0.736429
Target:  5'- gCGCGUcgcccucacGCG-GGUCUUCaaGCCCAGGg -3'
miRNA:   3'- aGCGCA---------CGCuCCGGAGGagUGGGUCC- -5'
16129 5' -60.6 NC_004065.1 + 52876 0.68 0.717942
Target:  5'- aCGCuccuccgauCGAGGCCaguUCCUC-CCCAGGa -3'
miRNA:   3'- aGCGcac------GCUCCGG---AGGAGuGGGUCC- -5'
16129 5' -60.6 NC_004065.1 + 228064 0.68 0.717942
Target:  5'- -aGCGU-CG-GGCCUcCCUCAUCaCGGGg -3'
miRNA:   3'- agCGCAcGCuCCGGA-GGAGUGG-GUCC- -5'
16129 5' -60.6 NC_004065.1 + 105922 0.68 0.708598
Target:  5'- aUCGCG-GCGcugagccggauGGGCCUg--CACCCGGGc -3'
miRNA:   3'- -AGCGCaCGC-----------UCCGGAggaGUGGGUCC- -5'
16129 5' -60.6 NC_004065.1 + 222569 0.68 0.708598
Target:  5'- gUCGgugGUGCccaAGGUCUCCUCGCCCGc- -3'
miRNA:   3'- -AGCg--CACGc--UCCGGAGGAGUGGGUcc -5'
16129 5' -60.6 NC_004065.1 + 229153 0.68 0.708598
Target:  5'- aUGcCG-GCGGGGCgC-CCUCGCCCGGc -3'
miRNA:   3'- aGC-GCaCGCUCCG-GaGGAGUGGGUCc -5'
16129 5' -60.6 NC_004065.1 + 76717 0.68 0.708598
Target:  5'- gCGCGU-CGAGGUugcaCUCCUCGgCgGGGa -3'
miRNA:   3'- aGCGCAcGCUCCG----GAGGAGUgGgUCC- -5'
16129 5' -60.6 NC_004065.1 + 222703 0.69 0.657342
Target:  5'- cCGCGUcCGGuaccaccGGCucgaucgucaggagCUCCUCGCCCGGGa -3'
miRNA:   3'- aGCGCAcGCU-------CCG--------------GAGGAGUGGGUCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.