Results 1 - 20 of 53 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
16129 | 5' | -60.6 | NC_004065.1 | + | 535 | 0.66 | 0.830795 |
Target: 5'- -aGCGUGUGAaGCUUCCgcgacgagcggCGCCCGGc -3' miRNA: 3'- agCGCACGCUcCGGAGGa----------GUGGGUCc -5' |
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16129 | 5' | -60.6 | NC_004065.1 | + | 864 | 0.66 | 0.846155 |
Target: 5'- -aGCGUGUGA-GCUaUCCUC-CCCgAGGa -3' miRNA: 3'- agCGCACGCUcCGG-AGGAGuGGG-UCC- -5' |
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16129 | 5' | -60.6 | NC_004065.1 | + | 24214 | 0.79 | 0.197797 |
Target: 5'- aCGCGguugGCGAGGUUUCgCUCGCgCCAGGa -3' miRNA: 3'- aGCGCa---CGCUCCGGAG-GAGUG-GGUCC- -5' |
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16129 | 5' | -60.6 | NC_004065.1 | + | 25138 | 0.66 | 0.838557 |
Target: 5'- gCGCGgGgGAGGCCUCUcacaguUCcuCCCGGa -3' miRNA: 3'- aGCGCaCgCUCCGGAGG------AGu-GGGUCc -5' |
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16129 | 5' | -60.6 | NC_004065.1 | + | 27076 | 0.66 | 0.830795 |
Target: 5'- -gGCGacUGUGucGCgUCCUCucCCCAGGa -3' miRNA: 3'- agCGC--ACGCucCGgAGGAGu-GGGUCC- -5' |
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16129 | 5' | -60.6 | NC_004065.1 | + | 27773 | 0.67 | 0.769743 |
Target: 5'- aCGC-UGCGccgccgucuggaGGGCCUCCugccccagcagacgUCGCCCAGc -3' miRNA: 3'- aGCGcACGC------------UCCGGAGG--------------AGUGGGUCc -5' |
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16129 | 5' | -60.6 | NC_004065.1 | + | 30589 | 0.66 | 0.798223 |
Target: 5'- cCGCG-GCGAGcGCCUCgUCcgcguuCCgAGGc -3' miRNA: 3'- aGCGCaCGCUC-CGGAGgAGu-----GGgUCC- -5' |
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16129 | 5' | -60.6 | NC_004065.1 | + | 33216 | 0.66 | 0.814801 |
Target: 5'- gUCGCGgGCGAGGUgUCCgCAgaCgAGGg -3' miRNA: 3'- -AGCGCaCGCUCCGgAGGaGUg-GgUCC- -5' |
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16129 | 5' | -60.6 | NC_004065.1 | + | 37248 | 0.7 | 0.575047 |
Target: 5'- aCGgGUGU-AGGCCUCC-C-CCCGGGu -3' miRNA: 3'- aGCgCACGcUCCGGAGGaGuGGGUCC- -5' |
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16129 | 5' | -60.6 | NC_004065.1 | + | 52876 | 0.68 | 0.717942 |
Target: 5'- aCGCuccuccgauCGAGGCCaguUCCUC-CCCAGGa -3' miRNA: 3'- aGCGcac------GCUCCGG---AGGAGuGGGUCC- -5' |
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16129 | 5' | -60.6 | NC_004065.1 | + | 58233 | 0.67 | 0.745556 |
Target: 5'- cCGCGcaCGaAGGgCUCCUCGCUgAGGa -3' miRNA: 3'- aGCGCacGC-UCCgGAGGAGUGGgUCC- -5' |
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16129 | 5' | -60.6 | NC_004065.1 | + | 67565 | 0.66 | 0.822874 |
Target: 5'- cCGC--GCGAGGCCUUCgccgaaGCgCAGGg -3' miRNA: 3'- aGCGcaCGCUCCGGAGGag----UGgGUCC- -5' |
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16129 | 5' | -60.6 | NC_004065.1 | + | 71627 | 0.67 | 0.754597 |
Target: 5'- uUCGUGUuCGAGGCgUUCUCACacguccgCGGGa -3' miRNA: 3'- -AGCGCAcGCUCCGgAGGAGUGg------GUCC- -5' |
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16129 | 5' | -60.6 | NC_004065.1 | + | 76717 | 0.68 | 0.708598 |
Target: 5'- gCGCGU-CGAGGUugcaCUCCUCGgCgGGGa -3' miRNA: 3'- aGCGCAcGCUCCG----GAGGAGUgGgUCC- -5' |
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16129 | 5' | -60.6 | NC_004065.1 | + | 80384 | 0.66 | 0.838557 |
Target: 5'- gCGCGUGCaGGGCCUgCCgacggCGCCg--- -3' miRNA: 3'- aGCGCACGcUCCGGA-GGa----GUGGgucc -5' |
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16129 | 5' | -60.6 | NC_004065.1 | + | 80465 | 0.67 | 0.789733 |
Target: 5'- uUCGCG-GCGAGGgCUCCaacgGCCUucaaaAGGg -3' miRNA: 3'- -AGCGCaCGCUCCgGAGGag--UGGG-----UCC- -5' |
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16129 | 5' | -60.6 | NC_004065.1 | + | 82631 | 0.66 | 0.846155 |
Target: 5'- gUUGCGUcCGGGGgcgaaCCUCUgCGCCCAGa -3' miRNA: 3'- -AGCGCAcGCUCC-----GGAGGaGUGGGUCc -5' |
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16129 | 5' | -60.6 | NC_004065.1 | + | 91796 | 0.7 | 0.613222 |
Target: 5'- -gGCG-GCGAGcGCCUCgaCAUCCAGa -3' miRNA: 3'- agCGCaCGCUC-CGGAGgaGUGGGUCc -5' |
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16129 | 5' | -60.6 | NC_004065.1 | + | 96589 | 0.67 | 0.781117 |
Target: 5'- aCGCGUgGCGAcGCUgcaCUC-CCCGGGa -3' miRNA: 3'- aGCGCA-CGCUcCGGag-GAGuGGGUCC- -5' |
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16129 | 5' | -60.6 | NC_004065.1 | + | 97617 | 0.67 | 0.754597 |
Target: 5'- aCGUGUGCGAGGag-Ca-CAUCCAGGc -3' miRNA: 3'- aGCGCACGCUCCggaGgaGUGGGUCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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