Results 1 - 20 of 53 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
16129 | 5' | -60.6 | NC_004065.1 | + | 133749 | 0.66 | 0.822874 |
Target: 5'- -gGCGUGCGA--CUUCUUCaggcaACCCGGGg -3' miRNA: 3'- agCGCACGCUccGGAGGAG-----UGGGUCC- -5' |
|||||||
16129 | 5' | -60.6 | NC_004065.1 | + | 71627 | 0.67 | 0.754597 |
Target: 5'- uUCGUGUuCGAGGCgUUCUCACacguccgCGGGa -3' miRNA: 3'- -AGCGCAcGCUCCGgAGGAGUGg------GUCC- -5' |
|||||||
16129 | 5' | -60.6 | NC_004065.1 | + | 118501 | 0.67 | 0.754597 |
Target: 5'- cUGCG-GUGGGGCC-UgUCGCUCGGGu -3' miRNA: 3'- aGCGCaCGCUCCGGaGgAGUGGGUCC- -5' |
|||||||
16129 | 5' | -60.6 | NC_004065.1 | + | 226489 | 0.67 | 0.763542 |
Target: 5'- cUGCGauucuuuCGAGGUCUCgCUCuCCCAGGc -3' miRNA: 3'- aGCGCac-----GCUCCGGAG-GAGuGGGUCC- -5' |
|||||||
16129 | 5' | -60.6 | NC_004065.1 | + | 27773 | 0.67 | 0.769743 |
Target: 5'- aCGC-UGCGccgccgucuggaGGGCCUCCugccccagcagacgUCGCCCAGc -3' miRNA: 3'- aGCGcACGC------------UCCGGAGG--------------AGUGGGUCc -5' |
|||||||
16129 | 5' | -60.6 | NC_004065.1 | + | 96589 | 0.67 | 0.781117 |
Target: 5'- aCGCGUgGCGAcGCUgcaCUC-CCCGGGa -3' miRNA: 3'- aGCGCA-CGCUcCGGag-GAGuGGGUCC- -5' |
|||||||
16129 | 5' | -60.6 | NC_004065.1 | + | 80465 | 0.67 | 0.789733 |
Target: 5'- uUCGCG-GCGAGGgCUCCaacgGCCUucaaaAGGg -3' miRNA: 3'- -AGCGCaCGCUCCgGAGGag--UGGG-----UCC- -5' |
|||||||
16129 | 5' | -60.6 | NC_004065.1 | + | 30589 | 0.66 | 0.798223 |
Target: 5'- cCGCG-GCGAGcGCCUCgUCcgcguuCCgAGGc -3' miRNA: 3'- aGCGCaCGCUC-CGGAGgAGu-----GGgUCC- -5' |
|||||||
16129 | 5' | -60.6 | NC_004065.1 | + | 33216 | 0.66 | 0.814801 |
Target: 5'- gUCGCGgGCGAGGUgUCCgCAgaCgAGGg -3' miRNA: 3'- -AGCGCaCGCUCCGgAGGaGUg-GgUCC- -5' |
|||||||
16129 | 5' | -60.6 | NC_004065.1 | + | 58233 | 0.67 | 0.745556 |
Target: 5'- cCGCGcaCGaAGGgCUCCUCGCUgAGGa -3' miRNA: 3'- aGCGCacGC-UCCgGAGGAGUGGgUCC- -5' |
|||||||
16129 | 5' | -60.6 | NC_004065.1 | + | 108737 | 0.68 | 0.736429 |
Target: 5'- gCGCGUcgcccucacGCG-GGUCUUCaaGCCCAGGg -3' miRNA: 3'- aGCGCA---------CGCuCCGGAGGagUGGGUCC- -5' |
|||||||
16129 | 5' | -60.6 | NC_004065.1 | + | 228064 | 0.68 | 0.717942 |
Target: 5'- -aGCGU-CG-GGCCUcCCUCAUCaCGGGg -3' miRNA: 3'- agCGCAcGCuCCGGA-GGAGUGG-GUCC- -5' |
|||||||
16129 | 5' | -60.6 | NC_004065.1 | + | 24214 | 0.79 | 0.197797 |
Target: 5'- aCGCGguugGCGAGGUUUCgCUCGCgCCAGGa -3' miRNA: 3'- aGCGCa---CGCUCCGGAG-GAGUG-GGUCC- -5' |
|||||||
16129 | 5' | -60.6 | NC_004065.1 | + | 103753 | 0.75 | 0.352275 |
Target: 5'- uUCGCGcgGCGGGGCCUCCggaccgUCGCgCAGc -3' miRNA: 3'- -AGCGCa-CGCUCCGGAGG------AGUGgGUCc -5' |
|||||||
16129 | 5' | -60.6 | NC_004065.1 | + | 185246 | 0.72 | 0.509797 |
Target: 5'- -gGUGUGCGgcccAGGCCUcggacgacCCUgGCCCGGGc -3' miRNA: 3'- agCGCACGC----UCCGGA--------GGAgUGGGUCC- -5' |
|||||||
16129 | 5' | -60.6 | NC_004065.1 | + | 190983 | 0.71 | 0.546768 |
Target: 5'- cCGUGUGCGGGGUcacgaaguaCUgUUCGCCCAGc -3' miRNA: 3'- aGCGCACGCUCCG---------GAgGAGUGGGUCc -5' |
|||||||
16129 | 5' | -60.6 | NC_004065.1 | + | 222703 | 0.69 | 0.657342 |
Target: 5'- cCGCGUcCGGuaccaccGGCucgaucgucaggagCUCCUCGCCCGGGa -3' miRNA: 3'- aGCGCAcGCU-------CCG--------------GAGGAGUGGGUCC- -5' |
|||||||
16129 | 5' | -60.6 | NC_004065.1 | + | 222569 | 0.68 | 0.708598 |
Target: 5'- gUCGgugGUGCccaAGGUCUCCUCGCCCGc- -3' miRNA: 3'- -AGCg--CACGc--UCCGGAGGAGUGGGUcc -5' |
|||||||
16129 | 5' | -60.6 | NC_004065.1 | + | 76717 | 0.68 | 0.708598 |
Target: 5'- gCGCGU-CGAGGUugcaCUCCUCGgCgGGGa -3' miRNA: 3'- aGCGCAcGCUCCG----GAGGAGUgGgUCC- -5' |
|||||||
16129 | 5' | -60.6 | NC_004065.1 | + | 229153 | 0.68 | 0.708598 |
Target: 5'- aUGcCG-GCGGGGCgC-CCUCGCCCGGc -3' miRNA: 3'- aGC-GCaCGCUCCG-GaGGAGUGGGUCc -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home