miRNA display CGI


Results 1 - 20 of 49 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1613 5' -55 NC_001347.2 + 38986 0.65 0.975488
Target:  5'- -cCGUCGGGuCGGCugCGGGGucCACc- -3'
miRNA:   3'- cuGCAGCCC-GUCGugGUUUCu-GUGca -5'
1613 5' -55 NC_001347.2 + 47793 0.65 0.975488
Target:  5'- gGugG-CcGGCGGCAuCUAGAGACAUGa -3'
miRNA:   3'- -CugCaGcCCGUCGU-GGUUUCUGUGCa -5'
1613 5' -55 NC_001347.2 + 208043 0.65 0.975238
Target:  5'- cGACGUCGGaGUcgcggcguucguuGGCGCCGcuGcCGCGUc -3'
miRNA:   3'- -CUGCAGCC-CG-------------UCGUGGUuuCuGUGCA- -5'
1613 5' -55 NC_001347.2 + 222902 0.66 0.972908
Target:  5'- uGugGUCguGGGUGGUGCgAGAGuACACGa -3'
miRNA:   3'- -CugCAG--CCCGUCGUGgUUUC-UGUGCa -5'
1613 5' -55 NC_001347.2 + 173823 0.66 0.972639
Target:  5'- gGugGaUCGGGCGGCGgCGgaggaggAGGAgGCGg -3'
miRNA:   3'- -CugC-AGCCCGUCGUgGU-------UUCUgUGCa -5'
1613 5' -55 NC_001347.2 + 100876 0.66 0.970136
Target:  5'- aGGCGgcgCGGcGCAGCGCCGGccauucuccGGGuCGCGc -3'
miRNA:   3'- -CUGCa--GCC-CGUCGUGGUU---------UCU-GUGCa -5'
1613 5' -55 NC_001347.2 + 37532 0.66 0.970136
Target:  5'- -uCGUCGGGuCGGCuguccCCGAGGACccaAUGUg -3'
miRNA:   3'- cuGCAGCCC-GUCGu----GGUUUCUG---UGCA- -5'
1613 5' -55 NC_001347.2 + 173515 0.66 0.970136
Target:  5'- uACGUCGGGaaCAGCGgCA-AGuCGCGUg -3'
miRNA:   3'- cUGCAGCCC--GUCGUgGUuUCuGUGCA- -5'
1613 5' -55 NC_001347.2 + 29750 0.66 0.967168
Target:  5'- aGugGUgGcGGCAGcCACgGAGGAgACGa -3'
miRNA:   3'- -CugCAgC-CCGUC-GUGgUUUCUgUGCa -5'
1613 5' -55 NC_001347.2 + 13771 0.66 0.967168
Target:  5'- gGACGUCGGG----ACCGAcGGACGCGa -3'
miRNA:   3'- -CUGCAGCCCgucgUGGUU-UCUGUGCa -5'
1613 5' -55 NC_001347.2 + 126299 0.66 0.967168
Target:  5'- aGCGucuUCGGGCA-CACCGAGGGcCAgGUg -3'
miRNA:   3'- cUGC---AGCCCGUcGUGGUUUCU-GUgCA- -5'
1613 5' -55 NC_001347.2 + 142572 0.66 0.967168
Target:  5'- cGGCGUCGgcGGgAGCAgCGGGGGCGgCGg -3'
miRNA:   3'- -CUGCAGC--CCgUCGUgGUUUCUGU-GCa -5'
1613 5' -55 NC_001347.2 + 167482 0.66 0.963997
Target:  5'- aACGUgGGGCuGUACaCAuaGAGGCACa- -3'
miRNA:   3'- cUGCAgCCCGuCGUG-GU--UUCUGUGca -5'
1613 5' -55 NC_001347.2 + 113624 0.66 0.963997
Target:  5'- cACGUCGucGCAGCGCCGgcuggagagcgaGAGGCcgGCGUa -3'
miRNA:   3'- cUGCAGCc-CGUCGUGGU------------UUCUG--UGCA- -5'
1613 5' -55 NC_001347.2 + 38488 0.66 0.963997
Target:  5'- cGCG-CGGGCAGCACCGcgcccaGCGCc- -3'
miRNA:   3'- cUGCaGCCCGUCGUGGUuuc---UGUGca -5'
1613 5' -55 NC_001347.2 + 109465 0.66 0.960618
Target:  5'- cGCGUCaccggcGGCGGCGCCAuggcGGGCGCc- -3'
miRNA:   3'- cUGCAGc-----CCGUCGUGGUu---UCUGUGca -5'
1613 5' -55 NC_001347.2 + 191261 0.66 0.960618
Target:  5'- cGGCGUaaugCGGGCaggcgugcGGCACgAAGGGCACc- -3'
miRNA:   3'- -CUGCA----GCCCG--------UCGUGgUUUCUGUGca -5'
1613 5' -55 NC_001347.2 + 86968 0.66 0.959563
Target:  5'- aGGCGUCGGaGCAGUGCguGAGcuuaccguucuccaACGCGc -3'
miRNA:   3'- -CUGCAGCC-CGUCGUGguUUC--------------UGUGCa -5'
1613 5' -55 NC_001347.2 + 39975 0.67 0.953216
Target:  5'- cGACGUgCGGcGC-GCACggcgaaaaGAAGACGCGUg -3'
miRNA:   3'- -CUGCA-GCC-CGuCGUGg-------UUUCUGUGCA- -5'
1613 5' -55 NC_001347.2 + 139143 0.67 0.953216
Target:  5'- cGACGgCGGGguGCucACgAAAGuCACGUc -3'
miRNA:   3'- -CUGCaGCCCguCG--UGgUUUCuGUGCA- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.