Results 21 - 40 of 49 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
1613 | 5' | -55 | NC_001347.2 | + | 197806 | 0.67 | 0.944931 |
Target: 5'- uGACGcCGGGCaAGCAagaaaUCAccGACGCGa -3' miRNA: 3'- -CUGCaGCCCG-UCGU-----GGUuuCUGUGCa -5' |
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1613 | 5' | -55 | NC_001347.2 | + | 92502 | 0.67 | 0.949185 |
Target: 5'- cACGUCGGGCGuaaUACCAucG-CACGUc -3' miRNA: 3'- cUGCAGCCCGUc--GUGGUuuCuGUGCA- -5' |
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1613 | 5' | -55 | NC_001347.2 | + | 18409 | 0.67 | 0.944931 |
Target: 5'- cACGcCGGGUcGCACCGAGGugGagcCGUu -3' miRNA: 3'- cUGCaGCCCGuCGUGGUUUCugU---GCA- -5' |
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1613 | 5' | -55 | NC_001347.2 | + | 99971 | 0.67 | 0.949185 |
Target: 5'- uGC-UCGGGCaagcgaAGCGCCAucauGACGCGg -3' miRNA: 3'- cUGcAGCCCG------UCGUGGUuu--CUGUGCa -5' |
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1613 | 5' | -55 | NC_001347.2 | + | 158003 | 0.67 | 0.949185 |
Target: 5'- cGACGgc-GGCAGCugCGgcgguAGGACACGc -3' miRNA: 3'- -CUGCagcCCGUCGugGU-----UUCUGUGCa -5' |
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1613 | 5' | -55 | NC_001347.2 | + | 139143 | 0.67 | 0.953216 |
Target: 5'- cGACGgCGGGguGCucACgAAAGuCACGUc -3' miRNA: 3'- -CUGCaGCCCguCG--UGgUUUCuGUGCA- -5' |
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1613 | 5' | -55 | NC_001347.2 | + | 39975 | 0.67 | 0.953216 |
Target: 5'- cGACGUgCGGcGC-GCACggcgaaaaGAAGACGCGUg -3' miRNA: 3'- -CUGCA-GCC-CGuCGUGg-------UUUCUGUGCA- -5' |
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1613 | 5' | -55 | NC_001347.2 | + | 1684 | 0.68 | 0.930797 |
Target: 5'- aGACGUUGcuGC-GCGCCGAGGAgGCGa -3' miRNA: 3'- -CUGCAGCc-CGuCGUGGUUUCUgUGCa -5' |
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1613 | 5' | -55 | NC_001347.2 | + | 108661 | 0.69 | 0.902632 |
Target: 5'- cGCGUCGGGCaAGCAgaugUgGcAGGCGCGUc -3' miRNA: 3'- cUGCAGCCCG-UCGU----GgUuUCUGUGCA- -5' |
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1613 | 5' | -55 | NC_001347.2 | + | 112778 | 0.69 | 0.883015 |
Target: 5'- cACGaCGGG-GGCGCCGuAGGACGCGg -3' miRNA: 3'- cUGCaGCCCgUCGUGGU-UUCUGUGCa -5' |
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1613 | 5' | -55 | NC_001347.2 | + | 194353 | 0.69 | 0.89567 |
Target: 5'- uGCG-CGGGCAGC-CCAAGuucagcagcaucuGGCGCGg -3' miRNA: 3'- cUGCaGCCCGUCGuGGUUU-------------CUGUGCa -5' |
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1613 | 5' | -55 | NC_001347.2 | + | 153626 | 0.7 | 0.838116 |
Target: 5'- cGugGUgGGGguGCAggcguCCGAAGAgCACGg -3' miRNA: 3'- -CugCAgCCCguCGU-----GGUUUCU-GUGCa -5' |
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1613 | 5' | -55 | NC_001347.2 | + | 188627 | 0.7 | 0.838116 |
Target: 5'- -cCGUCGGGaCAGCGCguGGGACGUGa -3' miRNA: 3'- cuGCAGCCC-GUCGUGguUUCUGUGCa -5' |
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1613 | 5' | -55 | NC_001347.2 | + | 73720 | 0.7 | 0.846088 |
Target: 5'- -cCG-CGGGCAccGcCGCCGGAGGCGCGg -3' miRNA: 3'- cuGCaGCCCGU--C-GUGGUUUCUGUGCa -5' |
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1613 | 5' | -55 | NC_001347.2 | + | 75449 | 0.7 | 0.846088 |
Target: 5'- cACGUCGGGCAGCucaacgcgcGCCAGcu-CACGc -3' miRNA: 3'- cUGCAGCCCGUCG---------UGGUUucuGUGCa -5' |
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1613 | 5' | -55 | NC_001347.2 | + | 1765 | 0.7 | 0.861465 |
Target: 5'- aGACGcCGGGCAGgcgacugcaGCCGAugguacugcuGGGCGCGUg -3' miRNA: 3'- -CUGCaGCCCGUCg--------UGGUU----------UCUGUGCA- -5' |
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1613 | 5' | -55 | NC_001347.2 | + | 6578 | 0.7 | 0.861465 |
Target: 5'- -uUGUCGGGCGGCggccucgucucACCGacGAGACACc- -3' miRNA: 3'- cuGCAGCCCGUCG-----------UGGU--UUCUGUGca -5' |
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1613 | 5' | -55 | NC_001347.2 | + | 38568 | 0.71 | 0.821633 |
Target: 5'- cGACG-CGGGguGCGgCGccGACGCGa -3' miRNA: 3'- -CUGCaGCCCguCGUgGUuuCUGUGCa -5' |
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1613 | 5' | -55 | NC_001347.2 | + | 40622 | 0.71 | 0.821633 |
Target: 5'- cGAUGcCGGGguGUugCGGAGACGgGg -3' miRNA: 3'- -CUGCaGCCCguCGugGUUUCUGUgCa -5' |
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1613 | 5' | -55 | NC_001347.2 | + | 184960 | 0.71 | 0.804485 |
Target: 5'- cGGCGU-GGGCGGCuCgCGGAGACugGg -3' miRNA: 3'- -CUGCAgCCCGUCGuG-GUUUCUGugCa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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