miRNA display CGI


Results 1 - 20 of 49 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1613 5' -55 NC_001347.2 + 148106 1.06 0.007836
Target:  5'- uGACGUCGGGCAGCACCAAAGACACGUc -3'
miRNA:   3'- -CUGCAGCCCGUCGUGGUUUCUGUGCA- -5'
1613 5' -55 NC_001347.2 + 97908 0.76 0.51241
Target:  5'- cGGCGUCGGGCGGCGgCGGuaacACACGg -3'
miRNA:   3'- -CUGCAGCCCGUCGUgGUUuc--UGUGCa -5'
1613 5' -55 NC_001347.2 + 52876 0.76 0.51241
Target:  5'- -cCGUCGcGGCGGCACCAAcaaaGGACcACGUu -3'
miRNA:   3'- cuGCAGC-CCGUCGUGGUU----UCUG-UGCA- -5'
1613 5' -55 NC_001347.2 + 81740 0.73 0.69129
Target:  5'- cGAUGUCGGGCAggccGCACCAcGAGAgCACc- -3'
miRNA:   3'- -CUGCAGCCCGU----CGUGGU-UUCU-GUGca -5'
1613 5' -55 NC_001347.2 + 172294 0.72 0.739192
Target:  5'- cGugGUUGGaGCAGCACCAGGaggagggcaaggcGACGCa- -3'
miRNA:   3'- -CugCAGCC-CGUCGUGGUUU-------------CUGUGca -5'
1613 5' -55 NC_001347.2 + 161343 0.72 0.759118
Target:  5'- gGGgGUUGGGCAGgACUcccucguuggAGAGACGCGUg -3'
miRNA:   3'- -CUgCAGCCCGUCgUGG----------UUUCUGUGCA- -5'
1613 5' -55 NC_001347.2 + 142431 0.71 0.785831
Target:  5'- uGGCGUCGGcGCGGCGuCCGgcgucggGGGugGCGg -3'
miRNA:   3'- -CUGCAGCC-CGUCGU-GGU-------UUCugUGCa -5'
1613 5' -55 NC_001347.2 + 184960 0.71 0.804485
Target:  5'- cGGCGU-GGGCGGCuCgCGGAGACugGg -3'
miRNA:   3'- -CUGCAgCCCGUCGuG-GUUUCUGugCa -5'
1613 5' -55 NC_001347.2 + 127311 0.71 0.804485
Target:  5'- cGACGaCGuGGcCAGCACCAgccccGAGACACa- -3'
miRNA:   3'- -CUGCaGC-CC-GUCGUGGU-----UUCUGUGca -5'
1613 5' -55 NC_001347.2 + 200613 0.71 0.813138
Target:  5'- cGCGUCGGGCugcGCGCCGucGAGACccuGCa- -3'
miRNA:   3'- cUGCAGCCCGu--CGUGGU--UUCUG---UGca -5'
1613 5' -55 NC_001347.2 + 40622 0.71 0.821633
Target:  5'- cGAUGcCGGGguGUugCGGAGACGgGg -3'
miRNA:   3'- -CUGCaGCCCguCGugGUUUCUGUgCa -5'
1613 5' -55 NC_001347.2 + 38568 0.71 0.821633
Target:  5'- cGACG-CGGGguGCGgCGccGACGCGa -3'
miRNA:   3'- -CUGCaGCCCguCGUgGUuuCUGUGCa -5'
1613 5' -55 NC_001347.2 + 153626 0.7 0.838116
Target:  5'- cGugGUgGGGguGCAggcguCCGAAGAgCACGg -3'
miRNA:   3'- -CugCAgCCCguCGU-----GGUUUCU-GUGCa -5'
1613 5' -55 NC_001347.2 + 188627 0.7 0.838116
Target:  5'- -cCGUCGGGaCAGCGCguGGGACGUGa -3'
miRNA:   3'- cuGCAGCCC-GUCGUGguUUCUGUGCa -5'
1613 5' -55 NC_001347.2 + 73720 0.7 0.846088
Target:  5'- -cCG-CGGGCAccGcCGCCGGAGGCGCGg -3'
miRNA:   3'- cuGCaGCCCGU--C-GUGGUUUCUGUGCa -5'
1613 5' -55 NC_001347.2 + 75449 0.7 0.846088
Target:  5'- cACGUCGGGCAGCucaacgcgcGCCAGcu-CACGc -3'
miRNA:   3'- cUGCAGCCCGUCG---------UGGUUucuGUGCa -5'
1613 5' -55 NC_001347.2 + 6578 0.7 0.861465
Target:  5'- -uUGUCGGGCGGCggccucgucucACCGacGAGACACc- -3'
miRNA:   3'- cuGCAGCCCGUCG-----------UGGU--UUCUGUGca -5'
1613 5' -55 NC_001347.2 + 1765 0.7 0.861465
Target:  5'- aGACGcCGGGCAGgcgacugcaGCCGAugguacugcuGGGCGCGUg -3'
miRNA:   3'- -CUGCaGCCCGUCg--------UGGUU----------UCUGUGCA- -5'
1613 5' -55 NC_001347.2 + 112778 0.69 0.883015
Target:  5'- cACGaCGGG-GGCGCCGuAGGACGCGg -3'
miRNA:   3'- cUGCaGCCCgUCGUGGU-UUCUGUGCa -5'
1613 5' -55 NC_001347.2 + 194353 0.69 0.89567
Target:  5'- uGCG-CGGGCAGC-CCAAGuucagcagcaucuGGCGCGg -3'
miRNA:   3'- cUGCaGCCCGUCGuGGUUU-------------CUGUGCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.