miRNA display CGI


Results 21 - 40 of 49 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1613 5' -55 NC_001347.2 + 108661 0.69 0.902632
Target:  5'- cGCGUCGGGCaAGCAgaugUgGcAGGCGCGUc -3'
miRNA:   3'- cUGCAGCCCG-UCGU----GgUuUCUGUGCA- -5'
1613 5' -55 NC_001347.2 + 1684 0.68 0.930797
Target:  5'- aGACGUUGcuGC-GCGCCGAGGAgGCGa -3'
miRNA:   3'- -CUGCAGCc-CGuCGUGGUUUCUgUGCa -5'
1613 5' -55 NC_001347.2 + 7963 0.67 0.940449
Target:  5'- uGACGguggCGgcGGCAgaccaacauGCGCCGAAGACACa- -3'
miRNA:   3'- -CUGCa---GC--CCGU---------CGUGGUUUCUGUGca -5'
1613 5' -55 NC_001347.2 + 18409 0.67 0.944931
Target:  5'- cACGcCGGGUcGCACCGAGGugGagcCGUu -3'
miRNA:   3'- cUGCaGCCCGuCGUGGUUUCugU---GCA- -5'
1613 5' -55 NC_001347.2 + 197806 0.67 0.944931
Target:  5'- uGACGcCGGGCaAGCAagaaaUCAccGACGCGa -3'
miRNA:   3'- -CUGCaGCCCG-UCGU-----GGUuuCUGUGCa -5'
1613 5' -55 NC_001347.2 + 159572 0.67 0.944931
Target:  5'- -gUGUUGGaGCGGCGCCA--GACGCa- -3'
miRNA:   3'- cuGCAGCC-CGUCGUGGUuuCUGUGca -5'
1613 5' -55 NC_001347.2 + 99971 0.67 0.949185
Target:  5'- uGC-UCGGGCaagcgaAGCGCCAucauGACGCGg -3'
miRNA:   3'- cUGcAGCCCG------UCGUGGUuu--CUGUGCa -5'
1613 5' -55 NC_001347.2 + 92502 0.67 0.949185
Target:  5'- cACGUCGGGCGuaaUACCAucG-CACGUc -3'
miRNA:   3'- cUGCAGCCCGUc--GUGGUuuCuGUGCA- -5'
1613 5' -55 NC_001347.2 + 158003 0.67 0.949185
Target:  5'- cGACGgc-GGCAGCugCGgcgguAGGACACGc -3'
miRNA:   3'- -CUGCagcCCGUCGugGU-----UUCUGUGCa -5'
1613 5' -55 NC_001347.2 + 39975 0.67 0.953216
Target:  5'- cGACGUgCGGcGC-GCACggcgaaaaGAAGACGCGUg -3'
miRNA:   3'- -CUGCA-GCC-CGuCGUGg-------UUUCUGUGCA- -5'
1613 5' -55 NC_001347.2 + 139143 0.67 0.953216
Target:  5'- cGACGgCGGGguGCucACgAAAGuCACGUc -3'
miRNA:   3'- -CUGCaGCCCguCG--UGgUUUCuGUGCA- -5'
1613 5' -55 NC_001347.2 + 86968 0.66 0.959563
Target:  5'- aGGCGUCGGaGCAGUGCguGAGcuuaccguucuccaACGCGc -3'
miRNA:   3'- -CUGCAGCC-CGUCGUGguUUC--------------UGUGCa -5'
1613 5' -55 NC_001347.2 + 191261 0.66 0.960618
Target:  5'- cGGCGUaaugCGGGCaggcgugcGGCACgAAGGGCACc- -3'
miRNA:   3'- -CUGCA----GCCCG--------UCGUGgUUUCUGUGca -5'
1613 5' -55 NC_001347.2 + 109465 0.66 0.960618
Target:  5'- cGCGUCaccggcGGCGGCGCCAuggcGGGCGCc- -3'
miRNA:   3'- cUGCAGc-----CCGUCGUGGUu---UCUGUGca -5'
1613 5' -55 NC_001347.2 + 113624 0.66 0.963997
Target:  5'- cACGUCGucGCAGCGCCGgcuggagagcgaGAGGCcgGCGUa -3'
miRNA:   3'- cUGCAGCc-CGUCGUGGU------------UUCUG--UGCA- -5'
1613 5' -55 NC_001347.2 + 38488 0.66 0.963997
Target:  5'- cGCG-CGGGCAGCACCGcgcccaGCGCc- -3'
miRNA:   3'- cUGCaGCCCGUCGUGGUuuc---UGUGca -5'
1613 5' -55 NC_001347.2 + 167482 0.66 0.963997
Target:  5'- aACGUgGGGCuGUACaCAuaGAGGCACa- -3'
miRNA:   3'- cUGCAgCCCGuCGUG-GU--UUCUGUGca -5'
1613 5' -55 NC_001347.2 + 29750 0.66 0.967168
Target:  5'- aGugGUgGcGGCAGcCACgGAGGAgACGa -3'
miRNA:   3'- -CugCAgC-CCGUC-GUGgUUUCUgUGCa -5'
1613 5' -55 NC_001347.2 + 13771 0.66 0.967168
Target:  5'- gGACGUCGGG----ACCGAcGGACGCGa -3'
miRNA:   3'- -CUGCAGCCCgucgUGGUU-UCUGUGCa -5'
1613 5' -55 NC_001347.2 + 126299 0.66 0.967168
Target:  5'- aGCGucuUCGGGCA-CACCGAGGGcCAgGUg -3'
miRNA:   3'- cUGC---AGCCCGUcGUGGUUUCU-GUgCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.