Results 41 - 49 of 49 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
1613 | 5' | -55 | NC_001347.2 | + | 142572 | 0.66 | 0.967168 |
Target: 5'- cGGCGUCGgcGGgAGCAgCGGGGGCGgCGg -3' miRNA: 3'- -CUGCAGC--CCgUCGUgGUUUCUGU-GCa -5' |
|||||||
1613 | 5' | -55 | NC_001347.2 | + | 173515 | 0.66 | 0.970136 |
Target: 5'- uACGUCGGGaaCAGCGgCA-AGuCGCGUg -3' miRNA: 3'- cUGCAGCCC--GUCGUgGUuUCuGUGCA- -5' |
|||||||
1613 | 5' | -55 | NC_001347.2 | + | 37532 | 0.66 | 0.970136 |
Target: 5'- -uCGUCGGGuCGGCuguccCCGAGGACccaAUGUg -3' miRNA: 3'- cuGCAGCCC-GUCGu----GGUUUCUG---UGCA- -5' |
|||||||
1613 | 5' | -55 | NC_001347.2 | + | 100876 | 0.66 | 0.970136 |
Target: 5'- aGGCGgcgCGGcGCAGCGCCGGccauucuccGGGuCGCGc -3' miRNA: 3'- -CUGCa--GCC-CGUCGUGGUU---------UCU-GUGCa -5' |
|||||||
1613 | 5' | -55 | NC_001347.2 | + | 173823 | 0.66 | 0.972639 |
Target: 5'- gGugGaUCGGGCGGCGgCGgaggaggAGGAgGCGg -3' miRNA: 3'- -CugC-AGCCCGUCGUgGU-------UUCUgUGCa -5' |
|||||||
1613 | 5' | -55 | NC_001347.2 | + | 222902 | 0.66 | 0.972908 |
Target: 5'- uGugGUCguGGGUGGUGCgAGAGuACACGa -3' miRNA: 3'- -CugCAG--CCCGUCGUGgUUUC-UGUGCa -5' |
|||||||
1613 | 5' | -55 | NC_001347.2 | + | 208043 | 0.65 | 0.975238 |
Target: 5'- cGACGUCGGaGUcgcggcguucguuGGCGCCGcuGcCGCGUc -3' miRNA: 3'- -CUGCAGCC-CG-------------UCGUGGUuuCuGUGCA- -5' |
|||||||
1613 | 5' | -55 | NC_001347.2 | + | 47793 | 0.65 | 0.975488 |
Target: 5'- gGugG-CcGGCGGCAuCUAGAGACAUGa -3' miRNA: 3'- -CugCaGcCCGUCGU-GGUUUCUGUGCa -5' |
|||||||
1613 | 5' | -55 | NC_001347.2 | + | 38986 | 0.65 | 0.975488 |
Target: 5'- -cCGUCGGGuCGGCugCGGGGucCACc- -3' miRNA: 3'- cuGCAGCCC-GUCGugGUUUCu-GUGca -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home