Results 41 - 49 of 49 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
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| Predicted miRNA align pattern | |||||||
| 1613 | 5' | -55 | NC_001347.2 | + | 184960 | 0.71 | 0.804485 |
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Target: 5'- cGGCGU-GGGCGGCuCgCGGAGACugGg -3' miRNA: 3'- -CUGCAgCCCGUCGuG-GUUUCUGugCa -5' |
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| 1613 | 5' | -55 | NC_001347.2 | + | 127311 | 0.71 | 0.804485 |
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Target: 5'- cGACGaCGuGGcCAGCACCAgccccGAGACACa- -3' miRNA: 3'- -CUGCaGC-CC-GUCGUGGU-----UUCUGUGca -5' |
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| 1613 | 5' | -55 | NC_001347.2 | + | 142431 | 0.71 | 0.785831 |
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Target: 5'- uGGCGUCGGcGCGGCGuCCGgcgucggGGGugGCGg -3' miRNA: 3'- -CUGCAGCC-CGUCGU-GGU-------UUCugUGCa -5' |
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| 1613 | 5' | -55 | NC_001347.2 | + | 161343 | 0.72 | 0.759118 |
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Target: 5'- gGGgGUUGGGCAGgACUcccucguuggAGAGACGCGUg -3' miRNA: 3'- -CUgCAGCCCGUCgUGG----------UUUCUGUGCA- -5' |
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| 1613 | 5' | -55 | NC_001347.2 | + | 172294 | 0.72 | 0.739192 |
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Target: 5'- cGugGUUGGaGCAGCACCAGGaggagggcaaggcGACGCa- -3' miRNA: 3'- -CugCAGCC-CGUCGUGGUUU-------------CUGUGca -5' |
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| 1613 | 5' | -55 | NC_001347.2 | + | 81740 | 0.73 | 0.69129 |
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Target: 5'- cGAUGUCGGGCAggccGCACCAcGAGAgCACc- -3' miRNA: 3'- -CUGCAGCCCGU----CGUGGU-UUCU-GUGca -5' |
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| 1613 | 5' | -55 | NC_001347.2 | + | 52876 | 0.76 | 0.51241 |
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Target: 5'- -cCGUCGcGGCGGCACCAAcaaaGGACcACGUu -3' miRNA: 3'- cuGCAGC-CCGUCGUGGUU----UCUG-UGCA- -5' |
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| 1613 | 5' | -55 | NC_001347.2 | + | 97908 | 0.76 | 0.51241 |
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Target: 5'- cGGCGUCGGGCGGCGgCGGuaacACACGg -3' miRNA: 3'- -CUGCAGCCCGUCGUgGUUuc--UGUGCa -5' |
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| 1613 | 5' | -55 | NC_001347.2 | + | 148106 | 1.06 | 0.007836 |
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Target: 5'- uGACGUCGGGCAGCACCAAAGACACGUc -3' miRNA: 3'- -CUGCAGCCCGUCGUGGUUUCUGUGCA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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