miRNA display CGI


Results 1 - 20 of 49 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1613 5' -55 NC_001347.2 + 1684 0.68 0.930797
Target:  5'- aGACGUUGcuGC-GCGCCGAGGAgGCGa -3'
miRNA:   3'- -CUGCAGCc-CGuCGUGGUUUCUgUGCa -5'
1613 5' -55 NC_001347.2 + 1765 0.7 0.861465
Target:  5'- aGACGcCGGGCAGgcgacugcaGCCGAugguacugcuGGGCGCGUg -3'
miRNA:   3'- -CUGCaGCCCGUCg--------UGGUU----------UCUGUGCA- -5'
1613 5' -55 NC_001347.2 + 6578 0.7 0.861465
Target:  5'- -uUGUCGGGCGGCggccucgucucACCGacGAGACACc- -3'
miRNA:   3'- cuGCAGCCCGUCG-----------UGGU--UUCUGUGca -5'
1613 5' -55 NC_001347.2 + 7963 0.67 0.940449
Target:  5'- uGACGguggCGgcGGCAgaccaacauGCGCCGAAGACACa- -3'
miRNA:   3'- -CUGCa---GC--CCGU---------CGUGGUUUCUGUGca -5'
1613 5' -55 NC_001347.2 + 13771 0.66 0.967168
Target:  5'- gGACGUCGGG----ACCGAcGGACGCGa -3'
miRNA:   3'- -CUGCAGCCCgucgUGGUU-UCUGUGCa -5'
1613 5' -55 NC_001347.2 + 18409 0.67 0.944931
Target:  5'- cACGcCGGGUcGCACCGAGGugGagcCGUu -3'
miRNA:   3'- cUGCaGCCCGuCGUGGUUUCugU---GCA- -5'
1613 5' -55 NC_001347.2 + 29750 0.66 0.967168
Target:  5'- aGugGUgGcGGCAGcCACgGAGGAgACGa -3'
miRNA:   3'- -CugCAgC-CCGUC-GUGgUUUCUgUGCa -5'
1613 5' -55 NC_001347.2 + 37532 0.66 0.970136
Target:  5'- -uCGUCGGGuCGGCuguccCCGAGGACccaAUGUg -3'
miRNA:   3'- cuGCAGCCC-GUCGu----GGUUUCUG---UGCA- -5'
1613 5' -55 NC_001347.2 + 38488 0.66 0.963997
Target:  5'- cGCG-CGGGCAGCACCGcgcccaGCGCc- -3'
miRNA:   3'- cUGCaGCCCGUCGUGGUuuc---UGUGca -5'
1613 5' -55 NC_001347.2 + 38568 0.71 0.821633
Target:  5'- cGACG-CGGGguGCGgCGccGACGCGa -3'
miRNA:   3'- -CUGCaGCCCguCGUgGUuuCUGUGCa -5'
1613 5' -55 NC_001347.2 + 38986 0.65 0.975488
Target:  5'- -cCGUCGGGuCGGCugCGGGGucCACc- -3'
miRNA:   3'- cuGCAGCCC-GUCGugGUUUCu-GUGca -5'
1613 5' -55 NC_001347.2 + 39975 0.67 0.953216
Target:  5'- cGACGUgCGGcGC-GCACggcgaaaaGAAGACGCGUg -3'
miRNA:   3'- -CUGCA-GCC-CGuCGUGg-------UUUCUGUGCA- -5'
1613 5' -55 NC_001347.2 + 40622 0.71 0.821633
Target:  5'- cGAUGcCGGGguGUugCGGAGACGgGg -3'
miRNA:   3'- -CUGCaGCCCguCGugGUUUCUGUgCa -5'
1613 5' -55 NC_001347.2 + 47793 0.65 0.975488
Target:  5'- gGugG-CcGGCGGCAuCUAGAGACAUGa -3'
miRNA:   3'- -CugCaGcCCGUCGU-GGUUUCUGUGCa -5'
1613 5' -55 NC_001347.2 + 52876 0.76 0.51241
Target:  5'- -cCGUCGcGGCGGCACCAAcaaaGGACcACGUu -3'
miRNA:   3'- cuGCAGC-CCGUCGUGGUU----UCUG-UGCA- -5'
1613 5' -55 NC_001347.2 + 73720 0.7 0.846088
Target:  5'- -cCG-CGGGCAccGcCGCCGGAGGCGCGg -3'
miRNA:   3'- cuGCaGCCCGU--C-GUGGUUUCUGUGCa -5'
1613 5' -55 NC_001347.2 + 75449 0.7 0.846088
Target:  5'- cACGUCGGGCAGCucaacgcgcGCCAGcu-CACGc -3'
miRNA:   3'- cUGCAGCCCGUCG---------UGGUUucuGUGCa -5'
1613 5' -55 NC_001347.2 + 81740 0.73 0.69129
Target:  5'- cGAUGUCGGGCAggccGCACCAcGAGAgCACc- -3'
miRNA:   3'- -CUGCAGCCCGU----CGUGGU-UUCU-GUGca -5'
1613 5' -55 NC_001347.2 + 86968 0.66 0.959563
Target:  5'- aGGCGUCGGaGCAGUGCguGAGcuuaccguucuccaACGCGc -3'
miRNA:   3'- -CUGCAGCC-CGUCGUGguUUC--------------UGUGCa -5'
1613 5' -55 NC_001347.2 + 92502 0.67 0.949185
Target:  5'- cACGUCGGGCGuaaUACCAucG-CACGUc -3'
miRNA:   3'- cUGCAGCCCGUc--GUGGUuuCuGUGCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.