miRNA display CGI


Results 21 - 40 of 49 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1613 5' -55 NC_001347.2 + 97908 0.76 0.51241
Target:  5'- cGGCGUCGGGCGGCGgCGGuaacACACGg -3'
miRNA:   3'- -CUGCAGCCCGUCGUgGUUuc--UGUGCa -5'
1613 5' -55 NC_001347.2 + 99971 0.67 0.949185
Target:  5'- uGC-UCGGGCaagcgaAGCGCCAucauGACGCGg -3'
miRNA:   3'- cUGcAGCCCG------UCGUGGUuu--CUGUGCa -5'
1613 5' -55 NC_001347.2 + 100876 0.66 0.970136
Target:  5'- aGGCGgcgCGGcGCAGCGCCGGccauucuccGGGuCGCGc -3'
miRNA:   3'- -CUGCa--GCC-CGUCGUGGUU---------UCU-GUGCa -5'
1613 5' -55 NC_001347.2 + 108661 0.69 0.902632
Target:  5'- cGCGUCGGGCaAGCAgaugUgGcAGGCGCGUc -3'
miRNA:   3'- cUGCAGCCCG-UCGU----GgUuUCUGUGCA- -5'
1613 5' -55 NC_001347.2 + 109465 0.66 0.960618
Target:  5'- cGCGUCaccggcGGCGGCGCCAuggcGGGCGCc- -3'
miRNA:   3'- cUGCAGc-----CCGUCGUGGUu---UCUGUGca -5'
1613 5' -55 NC_001347.2 + 112778 0.69 0.883015
Target:  5'- cACGaCGGG-GGCGCCGuAGGACGCGg -3'
miRNA:   3'- cUGCaGCCCgUCGUGGU-UUCUGUGCa -5'
1613 5' -55 NC_001347.2 + 113624 0.66 0.963997
Target:  5'- cACGUCGucGCAGCGCCGgcuggagagcgaGAGGCcgGCGUa -3'
miRNA:   3'- cUGCAGCc-CGUCGUGGU------------UUCUG--UGCA- -5'
1613 5' -55 NC_001347.2 + 126299 0.66 0.967168
Target:  5'- aGCGucuUCGGGCA-CACCGAGGGcCAgGUg -3'
miRNA:   3'- cUGC---AGCCCGUcGUGGUUUCU-GUgCA- -5'
1613 5' -55 NC_001347.2 + 127311 0.71 0.804485
Target:  5'- cGACGaCGuGGcCAGCACCAgccccGAGACACa- -3'
miRNA:   3'- -CUGCaGC-CC-GUCGUGGU-----UUCUGUGca -5'
1613 5' -55 NC_001347.2 + 139143 0.67 0.953216
Target:  5'- cGACGgCGGGguGCucACgAAAGuCACGUc -3'
miRNA:   3'- -CUGCaGCCCguCG--UGgUUUCuGUGCA- -5'
1613 5' -55 NC_001347.2 + 142431 0.71 0.785831
Target:  5'- uGGCGUCGGcGCGGCGuCCGgcgucggGGGugGCGg -3'
miRNA:   3'- -CUGCAGCC-CGUCGU-GGU-------UUCugUGCa -5'
1613 5' -55 NC_001347.2 + 142572 0.66 0.967168
Target:  5'- cGGCGUCGgcGGgAGCAgCGGGGGCGgCGg -3'
miRNA:   3'- -CUGCAGC--CCgUCGUgGUUUCUGU-GCa -5'
1613 5' -55 NC_001347.2 + 148106 1.06 0.007836
Target:  5'- uGACGUCGGGCAGCACCAAAGACACGUc -3'
miRNA:   3'- -CUGCAGCCCGUCGUGGUUUCUGUGCA- -5'
1613 5' -55 NC_001347.2 + 153626 0.7 0.838116
Target:  5'- cGugGUgGGGguGCAggcguCCGAAGAgCACGg -3'
miRNA:   3'- -CugCAgCCCguCGU-----GGUUUCU-GUGCa -5'
1613 5' -55 NC_001347.2 + 158003 0.67 0.949185
Target:  5'- cGACGgc-GGCAGCugCGgcgguAGGACACGc -3'
miRNA:   3'- -CUGCagcCCGUCGugGU-----UUCUGUGCa -5'
1613 5' -55 NC_001347.2 + 159572 0.67 0.944931
Target:  5'- -gUGUUGGaGCGGCGCCA--GACGCa- -3'
miRNA:   3'- cuGCAGCC-CGUCGUGGUuuCUGUGca -5'
1613 5' -55 NC_001347.2 + 161343 0.72 0.759118
Target:  5'- gGGgGUUGGGCAGgACUcccucguuggAGAGACGCGUg -3'
miRNA:   3'- -CUgCAGCCCGUCgUGG----------UUUCUGUGCA- -5'
1613 5' -55 NC_001347.2 + 167482 0.66 0.963997
Target:  5'- aACGUgGGGCuGUACaCAuaGAGGCACa- -3'
miRNA:   3'- cUGCAgCCCGuCGUG-GU--UUCUGUGca -5'
1613 5' -55 NC_001347.2 + 172294 0.72 0.739192
Target:  5'- cGugGUUGGaGCAGCACCAGGaggagggcaaggcGACGCa- -3'
miRNA:   3'- -CugCAGCC-CGUCGUGGUUU-------------CUGUGca -5'
1613 5' -55 NC_001347.2 + 173515 0.66 0.970136
Target:  5'- uACGUCGGGaaCAGCGgCA-AGuCGCGUg -3'
miRNA:   3'- cUGCAGCCC--GUCGUgGUuUCuGUGCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.