Results 41 - 49 of 49 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position
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R_P_ratio# | P value |
| Predicted miRNA align pattern | |||||||
| 1613 | 5' | -55 | NC_001347.2 | + | 173823 | 0.66 | 0.972639 |
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Target: 5'- gGugGaUCGGGCGGCGgCGgaggaggAGGAgGCGg -3' miRNA: 3'- -CugC-AGCCCGUCGUgGU-------UUCUgUGCa -5' |
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| 1613 | 5' | -55 | NC_001347.2 | + | 184960 | 0.71 | 0.804485 |
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Target: 5'- cGGCGU-GGGCGGCuCgCGGAGACugGg -3' miRNA: 3'- -CUGCAgCCCGUCGuG-GUUUCUGugCa -5' |
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| 1613 | 5' | -55 | NC_001347.2 | + | 188627 | 0.7 | 0.838116 |
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Target: 5'- -cCGUCGGGaCAGCGCguGGGACGUGa -3' miRNA: 3'- cuGCAGCCC-GUCGUGguUUCUGUGCa -5' |
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| 1613 | 5' | -55 | NC_001347.2 | + | 191261 | 0.66 | 0.960618 |
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Target: 5'- cGGCGUaaugCGGGCaggcgugcGGCACgAAGGGCACc- -3' miRNA: 3'- -CUGCA----GCCCG--------UCGUGgUUUCUGUGca -5' |
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| 1613 | 5' | -55 | NC_001347.2 | + | 194353 | 0.69 | 0.89567 |
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Target: 5'- uGCG-CGGGCAGC-CCAAGuucagcagcaucuGGCGCGg -3' miRNA: 3'- cUGCaGCCCGUCGuGGUUU-------------CUGUGCa -5' |
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| 1613 | 5' | -55 | NC_001347.2 | + | 197806 | 0.67 | 0.944931 |
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Target: 5'- uGACGcCGGGCaAGCAagaaaUCAccGACGCGa -3' miRNA: 3'- -CUGCaGCCCG-UCGU-----GGUuuCUGUGCa -5' |
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| 1613 | 5' | -55 | NC_001347.2 | + | 200613 | 0.71 | 0.813138 |
|
Target: 5'- cGCGUCGGGCugcGCGCCGucGAGACccuGCa- -3' miRNA: 3'- cUGCAGCCCGu--CGUGGU--UUCUG---UGca -5' |
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| 1613 | 5' | -55 | NC_001347.2 | + | 208043 | 0.65 | 0.975238 |
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Target: 5'- cGACGUCGGaGUcgcggcguucguuGGCGCCGcuGcCGCGUc -3' miRNA: 3'- -CUGCAGCC-CG-------------UCGUGGUuuCuGUGCA- -5' |
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| 1613 | 5' | -55 | NC_001347.2 | + | 222902 | 0.66 | 0.972908 |
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Target: 5'- uGugGUCguGGGUGGUGCgAGAGuACACGa -3' miRNA: 3'- -CugCAG--CCCGUCGUGgUUUC-UGUGCa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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