miRNA display CGI


Results 1 - 20 of 49 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1613 5' -55 NC_001347.2 + 222902 0.66 0.972908
Target:  5'- uGugGUCguGGGUGGUGCgAGAGuACACGa -3'
miRNA:   3'- -CugCAG--CCCGUCGUGgUUUC-UGUGCa -5'
1613 5' -55 NC_001347.2 + 208043 0.65 0.975238
Target:  5'- cGACGUCGGaGUcgcggcguucguuGGCGCCGcuGcCGCGUc -3'
miRNA:   3'- -CUGCAGCC-CG-------------UCGUGGUuuCuGUGCA- -5'
1613 5' -55 NC_001347.2 + 200613 0.71 0.813138
Target:  5'- cGCGUCGGGCugcGCGCCGucGAGACccuGCa- -3'
miRNA:   3'- cUGCAGCCCGu--CGUGGU--UUCUG---UGca -5'
1613 5' -55 NC_001347.2 + 197806 0.67 0.944931
Target:  5'- uGACGcCGGGCaAGCAagaaaUCAccGACGCGa -3'
miRNA:   3'- -CUGCaGCCCG-UCGU-----GGUuuCUGUGCa -5'
1613 5' -55 NC_001347.2 + 194353 0.69 0.89567
Target:  5'- uGCG-CGGGCAGC-CCAAGuucagcagcaucuGGCGCGg -3'
miRNA:   3'- cUGCaGCCCGUCGuGGUUU-------------CUGUGCa -5'
1613 5' -55 NC_001347.2 + 191261 0.66 0.960618
Target:  5'- cGGCGUaaugCGGGCaggcgugcGGCACgAAGGGCACc- -3'
miRNA:   3'- -CUGCA----GCCCG--------UCGUGgUUUCUGUGca -5'
1613 5' -55 NC_001347.2 + 188627 0.7 0.838116
Target:  5'- -cCGUCGGGaCAGCGCguGGGACGUGa -3'
miRNA:   3'- cuGCAGCCC-GUCGUGguUUCUGUGCa -5'
1613 5' -55 NC_001347.2 + 184960 0.71 0.804485
Target:  5'- cGGCGU-GGGCGGCuCgCGGAGACugGg -3'
miRNA:   3'- -CUGCAgCCCGUCGuG-GUUUCUGugCa -5'
1613 5' -55 NC_001347.2 + 173823 0.66 0.972639
Target:  5'- gGugGaUCGGGCGGCGgCGgaggaggAGGAgGCGg -3'
miRNA:   3'- -CugC-AGCCCGUCGUgGU-------UUCUgUGCa -5'
1613 5' -55 NC_001347.2 + 173515 0.66 0.970136
Target:  5'- uACGUCGGGaaCAGCGgCA-AGuCGCGUg -3'
miRNA:   3'- cUGCAGCCC--GUCGUgGUuUCuGUGCA- -5'
1613 5' -55 NC_001347.2 + 172294 0.72 0.739192
Target:  5'- cGugGUUGGaGCAGCACCAGGaggagggcaaggcGACGCa- -3'
miRNA:   3'- -CugCAGCC-CGUCGUGGUUU-------------CUGUGca -5'
1613 5' -55 NC_001347.2 + 167482 0.66 0.963997
Target:  5'- aACGUgGGGCuGUACaCAuaGAGGCACa- -3'
miRNA:   3'- cUGCAgCCCGuCGUG-GU--UUCUGUGca -5'
1613 5' -55 NC_001347.2 + 161343 0.72 0.759118
Target:  5'- gGGgGUUGGGCAGgACUcccucguuggAGAGACGCGUg -3'
miRNA:   3'- -CUgCAGCCCGUCgUGG----------UUUCUGUGCA- -5'
1613 5' -55 NC_001347.2 + 159572 0.67 0.944931
Target:  5'- -gUGUUGGaGCGGCGCCA--GACGCa- -3'
miRNA:   3'- cuGCAGCC-CGUCGUGGUuuCUGUGca -5'
1613 5' -55 NC_001347.2 + 158003 0.67 0.949185
Target:  5'- cGACGgc-GGCAGCugCGgcgguAGGACACGc -3'
miRNA:   3'- -CUGCagcCCGUCGugGU-----UUCUGUGCa -5'
1613 5' -55 NC_001347.2 + 153626 0.7 0.838116
Target:  5'- cGugGUgGGGguGCAggcguCCGAAGAgCACGg -3'
miRNA:   3'- -CugCAgCCCguCGU-----GGUUUCU-GUGCa -5'
1613 5' -55 NC_001347.2 + 148106 1.06 0.007836
Target:  5'- uGACGUCGGGCAGCACCAAAGACACGUc -3'
miRNA:   3'- -CUGCAGCCCGUCGUGGUUUCUGUGCA- -5'
1613 5' -55 NC_001347.2 + 142572 0.66 0.967168
Target:  5'- cGGCGUCGgcGGgAGCAgCGGGGGCGgCGg -3'
miRNA:   3'- -CUGCAGC--CCgUCGUgGUUUCUGU-GCa -5'
1613 5' -55 NC_001347.2 + 142431 0.71 0.785831
Target:  5'- uGGCGUCGGcGCGGCGuCCGgcgucggGGGugGCGg -3'
miRNA:   3'- -CUGCAGCC-CGUCGU-GGU-------UUCugUGCa -5'
1613 5' -55 NC_001347.2 + 139143 0.67 0.953216
Target:  5'- cGACGgCGGGguGCucACgAAAGuCACGUc -3'
miRNA:   3'- -CUGCaGCCCguCG--UGgUUUCuGUGCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.