miRNA display CGI


Results 21 - 40 of 49 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1613 5' -55 NC_001347.2 + 127311 0.71 0.804485
Target:  5'- cGACGaCGuGGcCAGCACCAgccccGAGACACa- -3'
miRNA:   3'- -CUGCaGC-CC-GUCGUGGU-----UUCUGUGca -5'
1613 5' -55 NC_001347.2 + 126299 0.66 0.967168
Target:  5'- aGCGucuUCGGGCA-CACCGAGGGcCAgGUg -3'
miRNA:   3'- cUGC---AGCCCGUcGUGGUUUCU-GUgCA- -5'
1613 5' -55 NC_001347.2 + 113624 0.66 0.963997
Target:  5'- cACGUCGucGCAGCGCCGgcuggagagcgaGAGGCcgGCGUa -3'
miRNA:   3'- cUGCAGCc-CGUCGUGGU------------UUCUG--UGCA- -5'
1613 5' -55 NC_001347.2 + 112778 0.69 0.883015
Target:  5'- cACGaCGGG-GGCGCCGuAGGACGCGg -3'
miRNA:   3'- cUGCaGCCCgUCGUGGU-UUCUGUGCa -5'
1613 5' -55 NC_001347.2 + 109465 0.66 0.960618
Target:  5'- cGCGUCaccggcGGCGGCGCCAuggcGGGCGCc- -3'
miRNA:   3'- cUGCAGc-----CCGUCGUGGUu---UCUGUGca -5'
1613 5' -55 NC_001347.2 + 108661 0.69 0.902632
Target:  5'- cGCGUCGGGCaAGCAgaugUgGcAGGCGCGUc -3'
miRNA:   3'- cUGCAGCCCG-UCGU----GgUuUCUGUGCA- -5'
1613 5' -55 NC_001347.2 + 100876 0.66 0.970136
Target:  5'- aGGCGgcgCGGcGCAGCGCCGGccauucuccGGGuCGCGc -3'
miRNA:   3'- -CUGCa--GCC-CGUCGUGGUU---------UCU-GUGCa -5'
1613 5' -55 NC_001347.2 + 99971 0.67 0.949185
Target:  5'- uGC-UCGGGCaagcgaAGCGCCAucauGACGCGg -3'
miRNA:   3'- cUGcAGCCCG------UCGUGGUuu--CUGUGCa -5'
1613 5' -55 NC_001347.2 + 97908 0.76 0.51241
Target:  5'- cGGCGUCGGGCGGCGgCGGuaacACACGg -3'
miRNA:   3'- -CUGCAGCCCGUCGUgGUUuc--UGUGCa -5'
1613 5' -55 NC_001347.2 + 92502 0.67 0.949185
Target:  5'- cACGUCGGGCGuaaUACCAucG-CACGUc -3'
miRNA:   3'- cUGCAGCCCGUc--GUGGUuuCuGUGCA- -5'
1613 5' -55 NC_001347.2 + 86968 0.66 0.959563
Target:  5'- aGGCGUCGGaGCAGUGCguGAGcuuaccguucuccaACGCGc -3'
miRNA:   3'- -CUGCAGCC-CGUCGUGguUUC--------------UGUGCa -5'
1613 5' -55 NC_001347.2 + 81740 0.73 0.69129
Target:  5'- cGAUGUCGGGCAggccGCACCAcGAGAgCACc- -3'
miRNA:   3'- -CUGCAGCCCGU----CGUGGU-UUCU-GUGca -5'
1613 5' -55 NC_001347.2 + 75449 0.7 0.846088
Target:  5'- cACGUCGGGCAGCucaacgcgcGCCAGcu-CACGc -3'
miRNA:   3'- cUGCAGCCCGUCG---------UGGUUucuGUGCa -5'
1613 5' -55 NC_001347.2 + 73720 0.7 0.846088
Target:  5'- -cCG-CGGGCAccGcCGCCGGAGGCGCGg -3'
miRNA:   3'- cuGCaGCCCGU--C-GUGGUUUCUGUGCa -5'
1613 5' -55 NC_001347.2 + 52876 0.76 0.51241
Target:  5'- -cCGUCGcGGCGGCACCAAcaaaGGACcACGUu -3'
miRNA:   3'- cuGCAGC-CCGUCGUGGUU----UCUG-UGCA- -5'
1613 5' -55 NC_001347.2 + 47793 0.65 0.975488
Target:  5'- gGugG-CcGGCGGCAuCUAGAGACAUGa -3'
miRNA:   3'- -CugCaGcCCGUCGU-GGUUUCUGUGCa -5'
1613 5' -55 NC_001347.2 + 40622 0.71 0.821633
Target:  5'- cGAUGcCGGGguGUugCGGAGACGgGg -3'
miRNA:   3'- -CUGCaGCCCguCGugGUUUCUGUgCa -5'
1613 5' -55 NC_001347.2 + 39975 0.67 0.953216
Target:  5'- cGACGUgCGGcGC-GCACggcgaaaaGAAGACGCGUg -3'
miRNA:   3'- -CUGCA-GCC-CGuCGUGg-------UUUCUGUGCA- -5'
1613 5' -55 NC_001347.2 + 38986 0.65 0.975488
Target:  5'- -cCGUCGGGuCGGCugCGGGGucCACc- -3'
miRNA:   3'- cuGCAGCCC-GUCGugGUUUCu-GUGca -5'
1613 5' -55 NC_001347.2 + 38568 0.71 0.821633
Target:  5'- cGACG-CGGGguGCGgCGccGACGCGa -3'
miRNA:   3'- -CUGCaGCCCguCGUgGUuuCUGUGCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.