miRNA display CGI


Results 1 - 20 of 62 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16131 5' -61 NC_004065.1 + 225529 0.66 0.802207
Target:  5'- cUUCCGcACgCGCAGCugcUGCCCucaaUGGCg -3'
miRNA:   3'- -AAGGC-UG-GCGUCGc--ACGGGcag-ACCG- -5'
16131 5' -61 NC_004065.1 + 165150 0.66 0.802207
Target:  5'- cUCCGACgCGCGccGCG-GUCCGcaggaUGGCg -3'
miRNA:   3'- aAGGCUG-GCGU--CGCaCGGGCag---ACCG- -5'
16131 5' -61 NC_004065.1 + 82419 0.66 0.793697
Target:  5'- --aCGACCGCGGUGU--UgGUCUGGUc -3'
miRNA:   3'- aagGCUGGCGUCGCAcgGgCAGACCG- -5'
16131 5' -61 NC_004065.1 + 154577 0.66 0.793697
Target:  5'- cUCUGGCUccucuacugGCAuGCG-GCCCGUUcGGCg -3'
miRNA:   3'- aAGGCUGG---------CGU-CGCaCGGGCAGaCCG- -5'
16131 5' -61 NC_004065.1 + 127149 0.66 0.793697
Target:  5'- -aCCGGCgGCGGCGaucGCCC-UCUcGGUc -3'
miRNA:   3'- aaGGCUGgCGUCGCa--CGGGcAGA-CCG- -5'
16131 5' -61 NC_004065.1 + 229536 0.66 0.793697
Target:  5'- cUUCCGcggaCGCGGCGcgcgGCCCGga-GGCu -3'
miRNA:   3'- -AAGGCug--GCGUCGCa---CGGGCagaCCG- -5'
16131 5' -61 NC_004065.1 + 99666 0.66 0.793697
Target:  5'- -aUCGGCUguGCAGCaucaGCCCG-CUGGCc -3'
miRNA:   3'- aaGGCUGG--CGUCGca--CGGGCaGACCG- -5'
16131 5' -61 NC_004065.1 + 120150 0.66 0.793697
Target:  5'- --gCGGCCGCGGCGacGCCgGU--GGCa -3'
miRNA:   3'- aagGCUGGCGUCGCa-CGGgCAgaCCG- -5'
16131 5' -61 NC_004065.1 + 38011 0.66 0.791118
Target:  5'- -aCCGACCGUgaccacgGGUG-GCCCGcacaccauccugCUGGCc -3'
miRNA:   3'- aaGGCUGGCG-------UCGCaCGGGCa-----------GACCG- -5'
16131 5' -61 NC_004065.1 + 62486 0.66 0.785055
Target:  5'- --gCGGCCGCGGCGguagcGUUgGUCUucGGCa -3'
miRNA:   3'- aagGCUGGCGUCGCa----CGGgCAGA--CCG- -5'
16131 5' -61 NC_004065.1 + 53449 0.66 0.785055
Target:  5'- -aCCGACgGUGGuCGUGCCCGagaGGUu -3'
miRNA:   3'- aaGGCUGgCGUC-GCACGGGCagaCCG- -5'
16131 5' -61 NC_004065.1 + 82563 0.66 0.785055
Target:  5'- aUgCGGCCGCAGaCGUGgauCCCGcagaacucgUUGGCg -3'
miRNA:   3'- aAgGCUGGCGUC-GCAC---GGGCa--------GACCG- -5'
16131 5' -61 NC_004065.1 + 55260 0.66 0.782439
Target:  5'- aUCUGAaagugaacuagacaCCGCAGCGU-CCCGUUUuuauugaugucGGCa -3'
miRNA:   3'- aAGGCU--------------GGCGUCGCAcGGGCAGA-----------CCG- -5'
16131 5' -61 NC_004065.1 + 115196 0.66 0.776291
Target:  5'- aUCCGGCCGUGGCc-GCCgCGaCggGGCa -3'
miRNA:   3'- aAGGCUGGCGUCGcaCGG-GCaGa-CCG- -5'
16131 5' -61 NC_004065.1 + 179089 0.66 0.767411
Target:  5'- cUCCucGCCGCccauguuucGCGUGCCCGUgaaccccgugcCUGGUg -3'
miRNA:   3'- aAGGc-UGGCGu--------CGCACGGGCA-----------GACCG- -5'
16131 5' -61 NC_004065.1 + 105559 0.66 0.767411
Target:  5'- -cCCGG-CGCAGCGgcacggcGCgCCGUCggcgGGCu -3'
miRNA:   3'- aaGGCUgGCGUCGCa------CG-GGCAGa---CCG- -5'
16131 5' -61 NC_004065.1 + 161286 0.66 0.767411
Target:  5'- gUCCGAguCCgGCAGCGacCCCGUCaGGa -3'
miRNA:   3'- aAGGCU--GG-CGUCGCacGGGCAGaCCg -5'
16131 5' -61 NC_004065.1 + 47865 0.66 0.764725
Target:  5'- cUUCCauGGCCGCGGUGUGCuucggugccggguaCCGUaagUGGUa -3'
miRNA:   3'- -AAGG--CUGGCGUCGCACG--------------GGCAg--ACCG- -5'
16131 5' -61 NC_004065.1 + 123685 0.67 0.749335
Target:  5'- -cCCGugCaGCAGCGccgggccgcccuUGUCCGUCUuGCg -3'
miRNA:   3'- aaGGCugG-CGUCGC------------ACGGGCAGAcCG- -5'
16131 5' -61 NC_004065.1 + 223092 0.67 0.749335
Target:  5'- cUUCCGACgGCGGacgccgaggcCGUGCCCGcagCUGaaGCc -3'
miRNA:   3'- -AAGGCUGgCGUC----------GCACGGGCa--GAC--CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.