Results 1 - 20 of 62 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
16131 | 5' | -61 | NC_004065.1 | + | 115196 | 0.66 | 0.776291 |
Target: 5'- aUCCGGCCGUGGCc-GCCgCGaCggGGCa -3' miRNA: 3'- aAGGCUGGCGUCGcaCGG-GCaGa-CCG- -5' |
|||||||
16131 | 5' | -61 | NC_004065.1 | + | 120150 | 0.66 | 0.793697 |
Target: 5'- --gCGGCCGCGGCGacGCCgGU--GGCa -3' miRNA: 3'- aagGCUGGCGUCGCa-CGGgCAgaCCG- -5' |
|||||||
16131 | 5' | -61 | NC_004065.1 | + | 82419 | 0.66 | 0.793697 |
Target: 5'- --aCGACCGCGGUGU--UgGUCUGGUc -3' miRNA: 3'- aagGCUGGCGUCGCAcgGgCAGACCG- -5' |
|||||||
16131 | 5' | -61 | NC_004065.1 | + | 82563 | 0.66 | 0.785055 |
Target: 5'- aUgCGGCCGCAGaCGUGgauCCCGcagaacucgUUGGCg -3' miRNA: 3'- aAgGCUGGCGUC-GCAC---GGGCa--------GACCG- -5' |
|||||||
16131 | 5' | -61 | NC_004065.1 | + | 161286 | 0.66 | 0.767411 |
Target: 5'- gUCCGAguCCgGCAGCGacCCCGUCaGGa -3' miRNA: 3'- aAGGCU--GG-CGUCGCacGGGCAGaCCg -5' |
|||||||
16131 | 5' | -61 | NC_004065.1 | + | 105559 | 0.66 | 0.767411 |
Target: 5'- -cCCGG-CGCAGCGgcacggcGCgCCGUCggcgGGCu -3' miRNA: 3'- aaGGCUgGCGUCGCa------CG-GGCAGa---CCG- -5' |
|||||||
16131 | 5' | -61 | NC_004065.1 | + | 47865 | 0.66 | 0.764725 |
Target: 5'- cUUCCauGGCCGCGGUGUGCuucggugccggguaCCGUaagUGGUa -3' miRNA: 3'- -AAGG--CUGGCGUCGCACG--------------GGCAg--ACCG- -5' |
|||||||
16131 | 5' | -61 | NC_004065.1 | + | 165150 | 0.66 | 0.802207 |
Target: 5'- cUCCGACgCGCGccGCG-GUCCGcaggaUGGCg -3' miRNA: 3'- aAGGCUG-GCGU--CGCaCGGGCag---ACCG- -5' |
|||||||
16131 | 5' | -61 | NC_004065.1 | + | 154577 | 0.66 | 0.793697 |
Target: 5'- cUCUGGCUccucuacugGCAuGCG-GCCCGUUcGGCg -3' miRNA: 3'- aAGGCUGG---------CGU-CGCaCGGGCAGaCCG- -5' |
|||||||
16131 | 5' | -61 | NC_004065.1 | + | 229536 | 0.66 | 0.793697 |
Target: 5'- cUUCCGcggaCGCGGCGcgcgGCCCGga-GGCu -3' miRNA: 3'- -AAGGCug--GCGUCGCa---CGGGCagaCCG- -5' |
|||||||
16131 | 5' | -61 | NC_004065.1 | + | 225529 | 0.66 | 0.802207 |
Target: 5'- cUUCCGcACgCGCAGCugcUGCCCucaaUGGCg -3' miRNA: 3'- -AAGGC-UG-GCGUCGc--ACGGGcag-ACCG- -5' |
|||||||
16131 | 5' | -61 | NC_004065.1 | + | 55260 | 0.66 | 0.782439 |
Target: 5'- aUCUGAaagugaacuagacaCCGCAGCGU-CCCGUUUuuauugaugucGGCa -3' miRNA: 3'- aAGGCU--------------GGCGUCGCAcGGGCAGA-----------CCG- -5' |
|||||||
16131 | 5' | -61 | NC_004065.1 | + | 53449 | 0.66 | 0.785055 |
Target: 5'- -aCCGACgGUGGuCGUGCCCGagaGGUu -3' miRNA: 3'- aaGGCUGgCGUC-GCACGGGCagaCCG- -5' |
|||||||
16131 | 5' | -61 | NC_004065.1 | + | 62486 | 0.66 | 0.785055 |
Target: 5'- --gCGGCCGCGGCGguagcGUUgGUCUucGGCa -3' miRNA: 3'- aagGCUGGCGUCGCa----CGGgCAGA--CCG- -5' |
|||||||
16131 | 5' | -61 | NC_004065.1 | + | 38011 | 0.66 | 0.791118 |
Target: 5'- -aCCGACCGUgaccacgGGUG-GCCCGcacaccauccugCUGGCc -3' miRNA: 3'- aaGGCUGGCG-------UCGCaCGGGCa-----------GACCG- -5' |
|||||||
16131 | 5' | -61 | NC_004065.1 | + | 99666 | 0.66 | 0.793697 |
Target: 5'- -aUCGGCUguGCAGCaucaGCCCG-CUGGCc -3' miRNA: 3'- aaGGCUGG--CGUCGca--CGGGCaGACCG- -5' |
|||||||
16131 | 5' | -61 | NC_004065.1 | + | 179089 | 0.66 | 0.767411 |
Target: 5'- cUCCucGCCGCccauguuucGCGUGCCCGUgaaccccgugcCUGGUg -3' miRNA: 3'- aAGGc-UGGCGu--------CGCACGGGCA-----------GACCG- -5' |
|||||||
16131 | 5' | -61 | NC_004065.1 | + | 127149 | 0.66 | 0.793697 |
Target: 5'- -aCCGGCgGCGGCGaucGCCC-UCUcGGUc -3' miRNA: 3'- aaGGCUGgCGUCGCa--CGGGcAGA-CCG- -5' |
|||||||
16131 | 5' | -61 | NC_004065.1 | + | 211898 | 0.67 | 0.721548 |
Target: 5'- -cCCGucCCGCGGCGgGCCCGga-GGUu -3' miRNA: 3'- aaGGCu-GGCGUCGCaCGGGCagaCCG- -5' |
|||||||
16131 | 5' | -61 | NC_004065.1 | + | 35382 | 0.67 | 0.721548 |
Target: 5'- -gCUGGCCGaGGCGUGgaCCGUCaucGGCg -3' miRNA: 3'- aaGGCUGGCgUCGCACg-GGCAGa--CCG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home