Results 41 - 60 of 62 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
16131 | 5' | -61 | NC_004065.1 | + | 128442 | 0.67 | 0.730889 |
Target: 5'- gUCUGAgCGCGGCGgaggcGUCCG-CgGGCg -3' miRNA: 3'- aAGGCUgGCGUCGCa----CGGGCaGaCCG- -5' |
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16131 | 5' | -61 | NC_004065.1 | + | 123685 | 0.67 | 0.749335 |
Target: 5'- -cCCGugCaGCAGCGccgggccgcccuUGUCCGUCUuGCg -3' miRNA: 3'- aaGGCugG-CGUCGC------------ACGGGCAGAcCG- -5' |
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16131 | 5' | -61 | NC_004065.1 | + | 210319 | 0.67 | 0.712137 |
Target: 5'- -cUUGACCGUAGCGUaccauCCCGUCgGGg -3' miRNA: 3'- aaGGCUGGCGUCGCAc----GGGCAGaCCg -5' |
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16131 | 5' | -61 | NC_004065.1 | + | 30583 | 0.67 | 0.721548 |
Target: 5'- gUUCCG-CCGCGGCGagcGCCuCGUCcgcguuccgaGGCa -3' miRNA: 3'- -AAGGCuGGCGUCGCa--CGG-GCAGa---------CCG- -5' |
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16131 | 5' | -61 | NC_004065.1 | + | 47865 | 0.66 | 0.764725 |
Target: 5'- cUUCCauGGCCGCGGUGUGCuucggugccggguaCCGUaagUGGUa -3' miRNA: 3'- -AAGG--CUGGCGUCGCACG--------------GGCAg--ACCG- -5' |
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16131 | 5' | -61 | NC_004065.1 | + | 105559 | 0.66 | 0.767411 |
Target: 5'- -cCCGG-CGCAGCGgcacggcGCgCCGUCggcgGGCu -3' miRNA: 3'- aaGGCUgGCGUCGCa------CG-GGCAGa---CCG- -5' |
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16131 | 5' | -61 | NC_004065.1 | + | 161286 | 0.66 | 0.767411 |
Target: 5'- gUCCGAguCCgGCAGCGacCCCGUCaGGa -3' miRNA: 3'- aAGGCU--GG-CGUCGCacGGGCAGaCCg -5' |
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16131 | 5' | -61 | NC_004065.1 | + | 154577 | 0.66 | 0.793697 |
Target: 5'- cUCUGGCUccucuacugGCAuGCG-GCCCGUUcGGCg -3' miRNA: 3'- aAGGCUGG---------CGU-CGCaCGGGCAGaCCG- -5' |
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16131 | 5' | -61 | NC_004065.1 | + | 179089 | 0.66 | 0.767411 |
Target: 5'- cUCCucGCCGCccauguuucGCGUGCCCGUgaaccccgugcCUGGUg -3' miRNA: 3'- aAGGc-UGGCGu--------CGCACGGGCA-----------GACCG- -5' |
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16131 | 5' | -61 | NC_004065.1 | + | 82419 | 0.66 | 0.793697 |
Target: 5'- --aCGACCGCGGUGU--UgGUCUGGUc -3' miRNA: 3'- aagGCUGGCGUCGCAcgGgCAGACCG- -5' |
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16131 | 5' | -61 | NC_004065.1 | + | 120150 | 0.66 | 0.793697 |
Target: 5'- --gCGGCCGCGGCGacGCCgGU--GGCa -3' miRNA: 3'- aagGCUGGCGUCGCa-CGGgCAgaCCG- -5' |
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16131 | 5' | -61 | NC_004065.1 | + | 82563 | 0.66 | 0.785055 |
Target: 5'- aUgCGGCCGCAGaCGUGgauCCCGcagaacucgUUGGCg -3' miRNA: 3'- aAgGCUGGCGUC-GCAC---GGGCa--------GACCG- -5' |
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16131 | 5' | -61 | NC_004065.1 | + | 53449 | 0.66 | 0.785055 |
Target: 5'- -aCCGACgGUGGuCGUGCCCGagaGGUu -3' miRNA: 3'- aaGGCUGgCGUC-GCACGGGCagaCCG- -5' |
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16131 | 5' | -61 | NC_004065.1 | + | 165150 | 0.66 | 0.802207 |
Target: 5'- cUCCGACgCGCGccGCG-GUCCGcaggaUGGCg -3' miRNA: 3'- aAGGCUG-GCGU--CGCaCGGGCag---ACCG- -5' |
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16131 | 5' | -61 | NC_004065.1 | + | 55260 | 0.66 | 0.782439 |
Target: 5'- aUCUGAaagugaacuagacaCCGCAGCGU-CCCGUUUuuauugaugucGGCa -3' miRNA: 3'- aAGGCU--------------GGCGUCGCAcGGGCAGA-----------CCG- -5' |
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16131 | 5' | -61 | NC_004065.1 | + | 38011 | 0.66 | 0.791118 |
Target: 5'- -aCCGACCGUgaccacgGGUG-GCCCGcacaccauccugCUGGCc -3' miRNA: 3'- aaGGCUGGCG-------UCGCaCGGGCa-----------GACCG- -5' |
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16131 | 5' | -61 | NC_004065.1 | + | 99666 | 0.66 | 0.793697 |
Target: 5'- -aUCGGCUguGCAGCaucaGCCCG-CUGGCc -3' miRNA: 3'- aaGGCUGG--CGUCGca--CGGGCaGACCG- -5' |
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16131 | 5' | -61 | NC_004065.1 | + | 127149 | 0.66 | 0.793697 |
Target: 5'- -aCCGGCgGCGGCGaucGCCC-UCUcGGUc -3' miRNA: 3'- aaGGCUGgCGUCGCa--CGGGcAGA-CCG- -5' |
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16131 | 5' | -61 | NC_004065.1 | + | 225529 | 0.66 | 0.802207 |
Target: 5'- cUUCCGcACgCGCAGCugcUGCCCucaaUGGCg -3' miRNA: 3'- -AAGGC-UG-GCGUCGc--ACGGGcag-ACCG- -5' |
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16131 | 5' | -61 | NC_004065.1 | + | 62486 | 0.66 | 0.785055 |
Target: 5'- --gCGGCCGCGGCGguagcGUUgGUCUucGGCa -3' miRNA: 3'- aagGCUGGCGUCGCa----CGGgCAGA--CCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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