miRNA display CGI


Results 1 - 20 of 62 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16131 5' -61 NC_004065.1 + 139062 1.08 0.001909
Target:  5'- uUUCCGACCGCAGCGUGCCCGUCUGGCc -3'
miRNA:   3'- -AAGGCUGGCGUCGCACGGGCAGACCG- -5'
16131 5' -61 NC_004065.1 + 116720 0.78 0.210936
Target:  5'- gUCCGGCgcgcgaGCGGCGUcGCCCGUCaUGGUg -3'
miRNA:   3'- aAGGCUGg-----CGUCGCA-CGGGCAG-ACCG- -5'
16131 5' -61 NC_004065.1 + 116819 0.74 0.330489
Target:  5'- -aCCGACCgggGCAGCGUGgCCGUgaUGGUg -3'
miRNA:   3'- aaGGCUGG---CGUCGCACgGGCAg-ACCG- -5'
16131 5' -61 NC_004065.1 + 163718 0.73 0.398626
Target:  5'- gUCCGccgcgaucuuCCGCAGCGUGUCCGUgaacucgGGCa -3'
miRNA:   3'- aAGGCu---------GGCGUCGCACGGGCAga-----CCG- -5'
16131 5' -61 NC_004065.1 + 198871 0.72 0.414118
Target:  5'- cUCCGGCCGCGGCGgugucgaUGCCCGagUcGGa -3'
miRNA:   3'- aAGGCUGGCGUCGC-------ACGGGCagA-CCg -5'
16131 5' -61 NC_004065.1 + 30020 0.72 0.456592
Target:  5'- --aCGACCGCGGU--GCCCGUCaagcuggUGGCg -3'
miRNA:   3'- aagGCUGGCGUCGcaCGGGCAG-------ACCG- -5'
16131 5' -61 NC_004065.1 + 99967 0.72 0.457466
Target:  5'- -aCCG-CCGCGGCGUGCUCGggccgCgGGUc -3'
miRNA:   3'- aaGGCuGGCGUCGCACGGGCa----GaCCG- -5'
16131 5' -61 NC_004065.1 + 140674 0.72 0.457466
Target:  5'- -cCCGGCCuGCGGCcugucGUGCCuCGaguUCUGGCa -3'
miRNA:   3'- aaGGCUGG-CGUCG-----CACGG-GC---AGACCG- -5'
16131 5' -61 NC_004065.1 + 209546 0.71 0.466249
Target:  5'- -cCCGACCGCGGgacugaaGgagGCCCGgccggcugCUGGCg -3'
miRNA:   3'- aaGGCUGGCGUCg------Ca--CGGGCa-------GACCG- -5'
16131 5' -61 NC_004065.1 + 77845 0.71 0.484071
Target:  5'- cUCCGGaCGCGGCGUGggcucCCCGgugcacaugCUGGCa -3'
miRNA:   3'- aAGGCUgGCGUCGCAC-----GGGCa--------GACCG- -5'
16131 5' -61 NC_004065.1 + 96055 0.71 0.510475
Target:  5'- -cCCGGCCGCcgauauaGGCuUGCCCGUCcgcgGGUc -3'
miRNA:   3'- aaGGCUGGCG-------UCGcACGGGCAGa---CCG- -5'
16131 5' -61 NC_004065.1 + 145759 0.71 0.511396
Target:  5'- -gCCGAUCGCGucGCGcGCCgGUCgcgGGCg -3'
miRNA:   3'- aaGGCUGGCGU--CGCaCGGgCAGa--CCG- -5'
16131 5' -61 NC_004065.1 + 119508 0.7 0.549718
Target:  5'- -gUCGugCGCGGCGaGCCUGUCgacauccuuguccggGGCg -3'
miRNA:   3'- aaGGCugGCGUCGCaCGGGCAGa--------------CCG- -5'
16131 5' -61 NC_004065.1 + 656 0.7 0.558254
Target:  5'- gUCCGGCCGC-GCGUagcgagcacccGCUCG-CUGGUc -3'
miRNA:   3'- aAGGCUGGCGuCGCA-----------CGGGCaGACCG- -5'
16131 5' -61 NC_004065.1 + 88810 0.7 0.558254
Target:  5'- --aUGACCGCAcGCGgaucUGCCUGUCgucGGCg -3'
miRNA:   3'- aagGCUGGCGU-CGC----ACGGGCAGa--CCG- -5'
16131 5' -61 NC_004065.1 + 114232 0.7 0.567783
Target:  5'- -aCCGGCCGCAGUuuccGUGCCCGggaccGCc -3'
miRNA:   3'- aaGGCUGGCGUCG----CACGGGCagac-CG- -5'
16131 5' -61 NC_004065.1 + 208907 0.7 0.577352
Target:  5'- cUCCGGgCGCAGCagaaaGUGCcacacgucucuCCGUCgUGGCg -3'
miRNA:   3'- aAGGCUgGCGUCG-----CACG-----------GGCAG-ACCG- -5'
16131 5' -61 NC_004065.1 + 225277 0.69 0.59659
Target:  5'- -gCUGGCCGCA-CGUaGCCUGgcgaCUGGCg -3'
miRNA:   3'- aaGGCUGGCGUcGCA-CGGGCa---GACCG- -5'
16131 5' -61 NC_004065.1 + 125604 0.69 0.59659
Target:  5'- -gCCGugCGCGGCGggucgaUGCgCGcCUGGUa -3'
miRNA:   3'- aaGGCugGCGUCGC------ACGgGCaGACCG- -5'
16131 5' -61 NC_004065.1 + 194976 0.69 0.625606
Target:  5'- gUUCCuGGCCGCGuaGUacaGCCCGUCggacucGGCg -3'
miRNA:   3'- -AAGG-CUGGCGUcgCA---CGGGCAGa-----CCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.