miRNA display CGI


Results 21 - 40 of 62 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16131 5' -61 NC_004065.1 + 150782 0.67 0.740154
Target:  5'- -aUCGcGCCGuCAGCGUGaUCCG-CUGGUg -3'
miRNA:   3'- aaGGC-UGGC-GUCGCAC-GGGCaGACCG- -5'
16131 5' -61 NC_004065.1 + 128442 0.67 0.730889
Target:  5'- gUCUGAgCGCGGCGgaggcGUCCG-CgGGCg -3'
miRNA:   3'- aAGGCUgGCGUCGCa----CGGGCaGaCCG- -5'
16131 5' -61 NC_004065.1 + 35382 0.67 0.721548
Target:  5'- -gCUGGCCGaGGCGUGgaCCGUCaucGGCg -3'
miRNA:   3'- aaGGCUGGCgUCGCACg-GGCAGa--CCG- -5'
16131 5' -61 NC_004065.1 + 211898 0.67 0.721548
Target:  5'- -cCCGucCCGCGGCGgGCCCGga-GGUu -3'
miRNA:   3'- aaGGCu-GGCGUCGCaCGGGCagaCCG- -5'
16131 5' -61 NC_004065.1 + 150413 0.67 0.721548
Target:  5'- gUCCGcGCgCGCAGCGgguccgGCCUGUCcaacaGGUg -3'
miRNA:   3'- aAGGC-UG-GCGUCGCa-----CGGGCAGa----CCG- -5'
16131 5' -61 NC_004065.1 + 30583 0.67 0.721548
Target:  5'- gUUCCG-CCGCGGCGagcGCCuCGUCcgcguuccgaGGCa -3'
miRNA:   3'- -AAGGCuGGCGUCGCa--CGG-GCAGa---------CCG- -5'
16131 5' -61 NC_004065.1 + 208034 0.67 0.721548
Target:  5'- --aUGACCGuCGGCGUGgCCGU--GGCg -3'
miRNA:   3'- aagGCUGGC-GUCGCACgGGCAgaCCG- -5'
16131 5' -61 NC_004065.1 + 210319 0.67 0.712137
Target:  5'- -cUUGACCGUAGCGUaccauCCCGUCgGGg -3'
miRNA:   3'- aaGGCUGGCGUCGCAc----GGGCAGaCCg -5'
16131 5' -61 NC_004065.1 + 165110 0.67 0.712137
Target:  5'- cUCUGAg-GCGGCGUcccGCCCGgcgaCUGGCg -3'
miRNA:   3'- aAGGCUggCGUCGCA---CGGGCa---GACCG- -5'
16131 5' -61 NC_004065.1 + 164378 0.67 0.712137
Target:  5'- cUgCGGCgGCAGCGgcagcggGUCCGUCaGGUc -3'
miRNA:   3'- aAgGCUGgCGUCGCa------CGGGCAGaCCG- -5'
16131 5' -61 NC_004065.1 + 119634 0.67 0.702666
Target:  5'- -gUCGGCCGUGGCGUGUUCGaacGGCc -3'
miRNA:   3'- aaGGCUGGCGUCGCACGGGCagaCCG- -5'
16131 5' -61 NC_004065.1 + 94383 0.68 0.693141
Target:  5'- --aCGGCCGCGGCGagcUGUCgG-CUGGUg -3'
miRNA:   3'- aagGCUGGCGUCGC---ACGGgCaGACCG- -5'
16131 5' -61 NC_004065.1 + 118159 0.68 0.683571
Target:  5'- gUCaccgaGACCGCGGCGgcGgCCGUCacGGCu -3'
miRNA:   3'- aAGg----CUGGCGUCGCa-CgGGCAGa-CCG- -5'
16131 5' -61 NC_004065.1 + 170448 0.68 0.683571
Target:  5'- -gUCGACCaugcGCAGuCGcUGCCCGUCgccaucGGCu -3'
miRNA:   3'- aaGGCUGG----CGUC-GC-ACGGGCAGa-----CCG- -5'
16131 5' -61 NC_004065.1 + 207979 0.68 0.673
Target:  5'- -aCCGgagggauACCGCGGCcUGCCCGg--GGCc -3'
miRNA:   3'- aaGGC-------UGGCGUCGcACGGGCagaCCG- -5'
16131 5' -61 NC_004065.1 + 162169 0.68 0.661427
Target:  5'- -gCCGGCUGCGGCGcagcgucuucgccgUGCCCuUCUGcuGCg -3'
miRNA:   3'- aaGGCUGGCGUCGC--------------ACGGGcAGAC--CG- -5'
16131 5' -61 NC_004065.1 + 64645 0.68 0.654662
Target:  5'- -aUCGACCGC-GCGUcCgCCGUgCUGGCc -3'
miRNA:   3'- aaGGCUGGCGuCGCAcG-GGCA-GACCG- -5'
16131 5' -61 NC_004065.1 + 77753 0.68 0.644983
Target:  5'- --aCGACCaCGGUGUGCCUG-CUGuGCg -3'
miRNA:   3'- aagGCUGGcGUCGCACGGGCaGAC-CG- -5'
16131 5' -61 NC_004065.1 + 43470 0.68 0.644983
Target:  5'- aUCCG-CCGCAGCacGUGUCC-UC-GGCg -3'
miRNA:   3'- aAGGCuGGCGUCG--CACGGGcAGaCCG- -5'
16131 5' -61 NC_004065.1 + 74659 0.69 0.635296
Target:  5'- gUCCgGACCGCGGCGcGUCCGcCguaGCg -3'
miRNA:   3'- aAGG-CUGGCGUCGCaCGGGCaGac-CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.