miRNA display CGI


Results 1 - 20 of 62 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16131 5' -61 NC_004065.1 + 656 0.7 0.558254
Target:  5'- gUCCGGCCGC-GCGUagcgagcacccGCUCG-CUGGUc -3'
miRNA:   3'- aAGGCUGGCGuCGCA-----------CGGGCaGACCG- -5'
16131 5' -61 NC_004065.1 + 30020 0.72 0.456592
Target:  5'- --aCGACCGCGGU--GCCCGUCaagcuggUGGCg -3'
miRNA:   3'- aagGCUGGCGUCGcaCGGGCAG-------ACCG- -5'
16131 5' -61 NC_004065.1 + 30583 0.67 0.721548
Target:  5'- gUUCCG-CCGCGGCGagcGCCuCGUCcgcguuccgaGGCa -3'
miRNA:   3'- -AAGGCuGGCGUCGCa--CGG-GCAGa---------CCG- -5'
16131 5' -61 NC_004065.1 + 35382 0.67 0.721548
Target:  5'- -gCUGGCCGaGGCGUGgaCCGUCaucGGCg -3'
miRNA:   3'- aaGGCUGGCgUCGCACg-GGCAGa--CCG- -5'
16131 5' -61 NC_004065.1 + 38011 0.66 0.791118
Target:  5'- -aCCGACCGUgaccacgGGUG-GCCCGcacaccauccugCUGGCc -3'
miRNA:   3'- aaGGCUGGCG-------UCGCaCGGGCa-----------GACCG- -5'
16131 5' -61 NC_004065.1 + 43470 0.68 0.644983
Target:  5'- aUCCG-CCGCAGCacGUGUCC-UC-GGCg -3'
miRNA:   3'- aAGGCuGGCGUCG--CACGGGcAGaCCG- -5'
16131 5' -61 NC_004065.1 + 47299 0.69 0.635296
Target:  5'- --gUGGCCcCGGCGUcGCCCGUgaGGCc -3'
miRNA:   3'- aagGCUGGcGUCGCA-CGGGCAgaCCG- -5'
16131 5' -61 NC_004065.1 + 47865 0.66 0.764725
Target:  5'- cUUCCauGGCCGCGGUGUGCuucggugccggguaCCGUaagUGGUa -3'
miRNA:   3'- -AAGG--CUGGCGUCGCACG--------------GGCAg--ACCG- -5'
16131 5' -61 NC_004065.1 + 53449 0.66 0.785055
Target:  5'- -aCCGACgGUGGuCGUGCCCGagaGGUu -3'
miRNA:   3'- aaGGCUGgCGUC-GCACGGGCagaCCG- -5'
16131 5' -61 NC_004065.1 + 55260 0.66 0.782439
Target:  5'- aUCUGAaagugaacuagacaCCGCAGCGU-CCCGUUUuuauugaugucGGCa -3'
miRNA:   3'- aAGGCU--------------GGCGUCGCAcGGGCAGA-----------CCG- -5'
16131 5' -61 NC_004065.1 + 62486 0.66 0.785055
Target:  5'- --gCGGCCGCGGCGguagcGUUgGUCUucGGCa -3'
miRNA:   3'- aagGCUGGCGUCGCa----CGGgCAGA--CCG- -5'
16131 5' -61 NC_004065.1 + 64645 0.68 0.654662
Target:  5'- -aUCGACCGC-GCGUcCgCCGUgCUGGCc -3'
miRNA:   3'- aaGGCUGGCGuCGCAcG-GGCA-GACCG- -5'
16131 5' -61 NC_004065.1 + 74659 0.69 0.635296
Target:  5'- gUCCgGACCGCGGCGcGUCCGcCguaGCg -3'
miRNA:   3'- aAGG-CUGGCGUCGCaCGGGCaGac-CG- -5'
16131 5' -61 NC_004065.1 + 77753 0.68 0.644983
Target:  5'- --aCGACCaCGGUGUGCCUG-CUGuGCg -3'
miRNA:   3'- aagGCUGGcGUCGCACGGGCaGAC-CG- -5'
16131 5' -61 NC_004065.1 + 77845 0.71 0.484071
Target:  5'- cUCCGGaCGCGGCGUGggcucCCCGgugcacaugCUGGCa -3'
miRNA:   3'- aAGGCUgGCGUCGCAC-----GGGCa--------GACCG- -5'
16131 5' -61 NC_004065.1 + 82419 0.66 0.793697
Target:  5'- --aCGACCGCGGUGU--UgGUCUGGUc -3'
miRNA:   3'- aagGCUGGCGUCGCAcgGgCAGACCG- -5'
16131 5' -61 NC_004065.1 + 82563 0.66 0.785055
Target:  5'- aUgCGGCCGCAGaCGUGgauCCCGcagaacucgUUGGCg -3'
miRNA:   3'- aAgGCUGGCGUC-GCAC---GGGCa--------GACCG- -5'
16131 5' -61 NC_004065.1 + 83320 0.69 0.635296
Target:  5'- -gUCGAgCGCGGCGUcGCCCauGUCgugGGUa -3'
miRNA:   3'- aaGGCUgGCGUCGCA-CGGG--CAGa--CCG- -5'
16131 5' -61 NC_004065.1 + 88810 0.7 0.558254
Target:  5'- --aUGACCGCAcGCGgaucUGCCUGUCgucGGCg -3'
miRNA:   3'- aagGCUGGCGU-CGC----ACGGGCAGa--CCG- -5'
16131 5' -61 NC_004065.1 + 94383 0.68 0.693141
Target:  5'- --aCGGCCGCGGCGagcUGUCgG-CUGGUg -3'
miRNA:   3'- aagGCUGGCGUCGC---ACGGgCaGACCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.