miRNA display CGI


Results 1 - 20 of 62 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16131 5' -61 NC_004065.1 + 229536 0.66 0.793697
Target:  5'- cUUCCGcggaCGCGGCGcgcgGCCCGga-GGCu -3'
miRNA:   3'- -AAGGCug--GCGUCGCa---CGGGCagaCCG- -5'
16131 5' -61 NC_004065.1 + 225529 0.66 0.802207
Target:  5'- cUUCCGcACgCGCAGCugcUGCCCucaaUGGCg -3'
miRNA:   3'- -AAGGC-UG-GCGUCGc--ACGGGcag-ACCG- -5'
16131 5' -61 NC_004065.1 + 225277 0.69 0.59659
Target:  5'- -gCUGGCCGCA-CGUaGCCUGgcgaCUGGCg -3'
miRNA:   3'- aaGGCUGGCGUcGCA-CGGGCa---GACCG- -5'
16131 5' -61 NC_004065.1 + 223092 0.67 0.749335
Target:  5'- cUUCCGACgGCGGacgccgaggcCGUGCCCGcagCUGaaGCc -3'
miRNA:   3'- -AAGGCUGgCGUC----------GCACGGGCa--GAC--CG- -5'
16131 5' -61 NC_004065.1 + 211898 0.67 0.721548
Target:  5'- -cCCGucCCGCGGCGgGCCCGga-GGUu -3'
miRNA:   3'- aaGGCu-GGCGUCGCaCGGGCagaCCG- -5'
16131 5' -61 NC_004065.1 + 210319 0.67 0.712137
Target:  5'- -cUUGACCGUAGCGUaccauCCCGUCgGGg -3'
miRNA:   3'- aaGGCUGGCGUCGCAc----GGGCAGaCCg -5'
16131 5' -61 NC_004065.1 + 209546 0.71 0.466249
Target:  5'- -cCCGACCGCGGgacugaaGgagGCCCGgccggcugCUGGCg -3'
miRNA:   3'- aaGGCUGGCGUCg------Ca--CGGGCa-------GACCG- -5'
16131 5' -61 NC_004065.1 + 208907 0.7 0.577352
Target:  5'- cUCCGGgCGCAGCagaaaGUGCcacacgucucuCCGUCgUGGCg -3'
miRNA:   3'- aAGGCUgGCGUCG-----CACG-----------GGCAG-ACCG- -5'
16131 5' -61 NC_004065.1 + 208034 0.67 0.721548
Target:  5'- --aUGACCGuCGGCGUGgCCGU--GGCg -3'
miRNA:   3'- aagGCUGGC-GUCGCACgGGCAgaCCG- -5'
16131 5' -61 NC_004065.1 + 207979 0.68 0.673
Target:  5'- -aCCGgagggauACCGCGGCcUGCCCGg--GGCc -3'
miRNA:   3'- aaGGC-------UGGCGUCGcACGGGCagaCCG- -5'
16131 5' -61 NC_004065.1 + 198871 0.72 0.414118
Target:  5'- cUCCGGCCGCGGCGgugucgaUGCCCGagUcGGa -3'
miRNA:   3'- aAGGCUGGCGUCGC-------ACGGGCagA-CCg -5'
16131 5' -61 NC_004065.1 + 194976 0.69 0.625606
Target:  5'- gUUCCuGGCCGCGuaGUacaGCCCGUCggacucGGCg -3'
miRNA:   3'- -AAGG-CUGGCGUcgCA---CGGGCAGa-----CCG- -5'
16131 5' -61 NC_004065.1 + 179089 0.66 0.767411
Target:  5'- cUCCucGCCGCccauguuucGCGUGCCCGUgaaccccgugcCUGGUg -3'
miRNA:   3'- aAGGc-UGGCGu--------CGCACGGGCA-----------GACCG- -5'
16131 5' -61 NC_004065.1 + 170448 0.68 0.683571
Target:  5'- -gUCGACCaugcGCAGuCGcUGCCCGUCgccaucGGCu -3'
miRNA:   3'- aaGGCUGG----CGUC-GC-ACGGGCAGa-----CCG- -5'
16131 5' -61 NC_004065.1 + 165150 0.66 0.802207
Target:  5'- cUCCGACgCGCGccGCG-GUCCGcaggaUGGCg -3'
miRNA:   3'- aAGGCUG-GCGU--CGCaCGGGCag---ACCG- -5'
16131 5' -61 NC_004065.1 + 165110 0.67 0.712137
Target:  5'- cUCUGAg-GCGGCGUcccGCCCGgcgaCUGGCg -3'
miRNA:   3'- aAGGCUggCGUCGCA---CGGGCa---GACCG- -5'
16131 5' -61 NC_004065.1 + 164378 0.67 0.712137
Target:  5'- cUgCGGCgGCAGCGgcagcggGUCCGUCaGGUc -3'
miRNA:   3'- aAgGCUGgCGUCGCa------CGGGCAGaCCG- -5'
16131 5' -61 NC_004065.1 + 163718 0.73 0.398626
Target:  5'- gUCCGccgcgaucuuCCGCAGCGUGUCCGUgaacucgGGCa -3'
miRNA:   3'- aAGGCu---------GGCGUCGCACGGGCAga-----CCG- -5'
16131 5' -61 NC_004065.1 + 162169 0.68 0.661427
Target:  5'- -gCCGGCUGCGGCGcagcgucuucgccgUGCCCuUCUGcuGCg -3'
miRNA:   3'- aaGGCUGGCGUCGC--------------ACGGGcAGAC--CG- -5'
16131 5' -61 NC_004065.1 + 161286 0.66 0.767411
Target:  5'- gUCCGAguCCgGCAGCGacCCCGUCaGGa -3'
miRNA:   3'- aAGGCU--GG-CGUCGCacGGGCAGaCCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.