Results 21 - 40 of 62 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
16131 | 5' | -61 | NC_004065.1 | + | 154577 | 0.66 | 0.793697 |
Target: 5'- cUCUGGCUccucuacugGCAuGCG-GCCCGUUcGGCg -3' miRNA: 3'- aAGGCUGG---------CGU-CGCaCGGGCAGaCCG- -5' |
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16131 | 5' | -61 | NC_004065.1 | + | 150782 | 0.67 | 0.740154 |
Target: 5'- -aUCGcGCCGuCAGCGUGaUCCG-CUGGUg -3' miRNA: 3'- aaGGC-UGGC-GUCGCAC-GGGCaGACCG- -5' |
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16131 | 5' | -61 | NC_004065.1 | + | 150413 | 0.67 | 0.721548 |
Target: 5'- gUCCGcGCgCGCAGCGgguccgGCCUGUCcaacaGGUg -3' miRNA: 3'- aAGGC-UG-GCGUCGCa-----CGGGCAGa----CCG- -5' |
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16131 | 5' | -61 | NC_004065.1 | + | 145759 | 0.71 | 0.511396 |
Target: 5'- -gCCGAUCGCGucGCGcGCCgGUCgcgGGCg -3' miRNA: 3'- aaGGCUGGCGU--CGCaCGGgCAGa--CCG- -5' |
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16131 | 5' | -61 | NC_004065.1 | + | 140674 | 0.72 | 0.457466 |
Target: 5'- -cCCGGCCuGCGGCcugucGUGCCuCGaguUCUGGCa -3' miRNA: 3'- aaGGCUGG-CGUCG-----CACGG-GC---AGACCG- -5' |
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16131 | 5' | -61 | NC_004065.1 | + | 139062 | 1.08 | 0.001909 |
Target: 5'- uUUCCGACCGCAGCGUGCCCGUCUGGCc -3' miRNA: 3'- -AAGGCUGGCGUCGCACGGGCAGACCG- -5' |
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16131 | 5' | -61 | NC_004065.1 | + | 128442 | 0.67 | 0.730889 |
Target: 5'- gUCUGAgCGCGGCGgaggcGUCCG-CgGGCg -3' miRNA: 3'- aAGGCUgGCGUCGCa----CGGGCaGaCCG- -5' |
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16131 | 5' | -61 | NC_004065.1 | + | 127149 | 0.66 | 0.793697 |
Target: 5'- -aCCGGCgGCGGCGaucGCCC-UCUcGGUc -3' miRNA: 3'- aaGGCUGgCGUCGCa--CGGGcAGA-CCG- -5' |
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16131 | 5' | -61 | NC_004065.1 | + | 125604 | 0.69 | 0.59659 |
Target: 5'- -gCCGugCGCGGCGggucgaUGCgCGcCUGGUa -3' miRNA: 3'- aaGGCugGCGUCGC------ACGgGCaGACCG- -5' |
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16131 | 5' | -61 | NC_004065.1 | + | 123685 | 0.67 | 0.749335 |
Target: 5'- -cCCGugCaGCAGCGccgggccgcccuUGUCCGUCUuGCg -3' miRNA: 3'- aaGGCugG-CGUCGC------------ACGGGCAGAcCG- -5' |
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16131 | 5' | -61 | NC_004065.1 | + | 120150 | 0.66 | 0.793697 |
Target: 5'- --gCGGCCGCGGCGacGCCgGU--GGCa -3' miRNA: 3'- aagGCUGGCGUCGCa-CGGgCAgaCCG- -5' |
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16131 | 5' | -61 | NC_004065.1 | + | 119634 | 0.67 | 0.702666 |
Target: 5'- -gUCGGCCGUGGCGUGUUCGaacGGCc -3' miRNA: 3'- aaGGCUGGCGUCGCACGGGCagaCCG- -5' |
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16131 | 5' | -61 | NC_004065.1 | + | 119508 | 0.7 | 0.549718 |
Target: 5'- -gUCGugCGCGGCGaGCCUGUCgacauccuuguccggGGCg -3' miRNA: 3'- aaGGCugGCGUCGCaCGGGCAGa--------------CCG- -5' |
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16131 | 5' | -61 | NC_004065.1 | + | 118159 | 0.68 | 0.683571 |
Target: 5'- gUCaccgaGACCGCGGCGgcGgCCGUCacGGCu -3' miRNA: 3'- aAGg----CUGGCGUCGCa-CgGGCAGa-CCG- -5' |
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16131 | 5' | -61 | NC_004065.1 | + | 116819 | 0.74 | 0.330489 |
Target: 5'- -aCCGACCgggGCAGCGUGgCCGUgaUGGUg -3' miRNA: 3'- aaGGCUGG---CGUCGCACgGGCAg-ACCG- -5' |
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16131 | 5' | -61 | NC_004065.1 | + | 116720 | 0.78 | 0.210936 |
Target: 5'- gUCCGGCgcgcgaGCGGCGUcGCCCGUCaUGGUg -3' miRNA: 3'- aAGGCUGg-----CGUCGCA-CGGGCAG-ACCG- -5' |
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16131 | 5' | -61 | NC_004065.1 | + | 115196 | 0.66 | 0.776291 |
Target: 5'- aUCCGGCCGUGGCc-GCCgCGaCggGGCa -3' miRNA: 3'- aAGGCUGGCGUCGcaCGG-GCaGa-CCG- -5' |
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16131 | 5' | -61 | NC_004065.1 | + | 114232 | 0.7 | 0.567783 |
Target: 5'- -aCCGGCCGCAGUuuccGUGCCCGggaccGCc -3' miRNA: 3'- aaGGCUGGCGUCG----CACGGGCagac-CG- -5' |
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16131 | 5' | -61 | NC_004065.1 | + | 105559 | 0.66 | 0.767411 |
Target: 5'- -cCCGG-CGCAGCGgcacggcGCgCCGUCggcgGGCu -3' miRNA: 3'- aaGGCUgGCGUCGCa------CG-GGCAGa---CCG- -5' |
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16131 | 5' | -61 | NC_004065.1 | + | 99967 | 0.72 | 0.457466 |
Target: 5'- -aCCG-CCGCGGCGUGCUCGggccgCgGGUc -3' miRNA: 3'- aaGGCuGGCGUCGCACGGGCa----GaCCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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