miRNA display CGI


Results 1 - 20 of 62 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16131 5' -61 NC_004065.1 + 223092 0.67 0.749335
Target:  5'- cUUCCGACgGCGGacgccgaggcCGUGCCCGcagCUGaaGCc -3'
miRNA:   3'- -AAGGCUGgCGUC----------GCACGGGCa--GAC--CG- -5'
16131 5' -61 NC_004065.1 + 43470 0.68 0.644983
Target:  5'- aUCCG-CCGCAGCacGUGUCC-UC-GGCg -3'
miRNA:   3'- aAGGCuGGCGUCG--CACGGGcAGaCCG- -5'
16131 5' -61 NC_004065.1 + 64645 0.68 0.654662
Target:  5'- -aUCGACCGC-GCGUcCgCCGUgCUGGCc -3'
miRNA:   3'- aaGGCUGGCGuCGCAcG-GGCA-GACCG- -5'
16131 5' -61 NC_004065.1 + 118159 0.68 0.683571
Target:  5'- gUCaccgaGACCGCGGCGgcGgCCGUCacGGCu -3'
miRNA:   3'- aAGg----CUGGCGUCGCa-CgGGCAGa-CCG- -5'
16131 5' -61 NC_004065.1 + 210319 0.67 0.712137
Target:  5'- -cUUGACCGUAGCGUaccauCCCGUCgGGg -3'
miRNA:   3'- aaGGCUGGCGUCGCAc----GGGCAGaCCg -5'
16131 5' -61 NC_004065.1 + 30583 0.67 0.721548
Target:  5'- gUUCCG-CCGCGGCGagcGCCuCGUCcgcguuccgaGGCa -3'
miRNA:   3'- -AAGGCuGGCGUCGCa--CGG-GCAGa---------CCG- -5'
16131 5' -61 NC_004065.1 + 150413 0.67 0.721548
Target:  5'- gUCCGcGCgCGCAGCGgguccgGCCUGUCcaacaGGUg -3'
miRNA:   3'- aAGGC-UG-GCGUCGCa-----CGGGCAGa----CCG- -5'
16131 5' -61 NC_004065.1 + 128442 0.67 0.730889
Target:  5'- gUCUGAgCGCGGCGgaggcGUCCG-CgGGCg -3'
miRNA:   3'- aAGGCUgGCGUCGCa----CGGGCaGaCCG- -5'
16131 5' -61 NC_004065.1 + 123685 0.67 0.749335
Target:  5'- -cCCGugCaGCAGCGccgggccgcccuUGUCCGUCUuGCg -3'
miRNA:   3'- aaGGCugG-CGUCGC------------ACGGGCAGAcCG- -5'
16131 5' -61 NC_004065.1 + 77753 0.68 0.644983
Target:  5'- --aCGACCaCGGUGUGCCUG-CUGuGCg -3'
miRNA:   3'- aagGCUGGcGUCGCACGGGCaGAC-CG- -5'
16131 5' -61 NC_004065.1 + 74659 0.69 0.635296
Target:  5'- gUCCgGACCGCGGCGcGUCCGcCguaGCg -3'
miRNA:   3'- aAGG-CUGGCGUCGCaCGGGCaGac-CG- -5'
16131 5' -61 NC_004065.1 + 47299 0.69 0.635296
Target:  5'- --gUGGCCcCGGCGUcGCCCGUgaGGCc -3'
miRNA:   3'- aagGCUGGcGUCGCA-CGGGCAgaCCG- -5'
16131 5' -61 NC_004065.1 + 116819 0.74 0.330489
Target:  5'- -aCCGACCgggGCAGCGUGgCCGUgaUGGUg -3'
miRNA:   3'- aaGGCUGG---CGUCGCACgGGCAg-ACCG- -5'
16131 5' -61 NC_004065.1 + 99967 0.72 0.457466
Target:  5'- -aCCG-CCGCGGCGUGCUCGggccgCgGGUc -3'
miRNA:   3'- aaGGCuGGCGUCGCACGGGCa----GaCCG- -5'
16131 5' -61 NC_004065.1 + 145759 0.71 0.511396
Target:  5'- -gCCGAUCGCGucGCGcGCCgGUCgcgGGCg -3'
miRNA:   3'- aaGGCUGGCGU--CGCaCGGgCAGa--CCG- -5'
16131 5' -61 NC_004065.1 + 114232 0.7 0.567783
Target:  5'- -aCCGGCCGCAGUuuccGUGCCCGggaccGCc -3'
miRNA:   3'- aaGGCUGGCGUCG----CACGGGCagac-CG- -5'
16131 5' -61 NC_004065.1 + 208907 0.7 0.577352
Target:  5'- cUCCGGgCGCAGCagaaaGUGCcacacgucucuCCGUCgUGGCg -3'
miRNA:   3'- aAGGCUgGCGUCG-----CACG-----------GGCAG-ACCG- -5'
16131 5' -61 NC_004065.1 + 125604 0.69 0.59659
Target:  5'- -gCCGugCGCGGCGggucgaUGCgCGcCUGGUa -3'
miRNA:   3'- aaGGCugGCGUCGC------ACGgGCaGACCG- -5'
16131 5' -61 NC_004065.1 + 225277 0.69 0.59659
Target:  5'- -gCUGGCCGCA-CGUaGCCUGgcgaCUGGCg -3'
miRNA:   3'- aaGGCUGGCGUcGCA-CGGGCa---GACCG- -5'
16131 5' -61 NC_004065.1 + 194976 0.69 0.625606
Target:  5'- gUUCCuGGCCGCGuaGUacaGCCCGUCggacucGGCg -3'
miRNA:   3'- -AAGG-CUGGCGUcgCA---CGGGCAGa-----CCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.