miRNA display CGI


Results 41 - 60 of 62 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16131 5' -61 NC_004065.1 + 82419 0.66 0.793697
Target:  5'- --aCGACCGCGGUGU--UgGUCUGGUc -3'
miRNA:   3'- aagGCUGGCGUCGCAcgGgCAGACCG- -5'
16131 5' -61 NC_004065.1 + 120150 0.66 0.793697
Target:  5'- --gCGGCCGCGGCGacGCCgGU--GGCa -3'
miRNA:   3'- aagGCUGGCGUCGCa-CGGgCAgaCCG- -5'
16131 5' -61 NC_004065.1 + 154577 0.66 0.793697
Target:  5'- cUCUGGCUccucuacugGCAuGCG-GCCCGUUcGGCg -3'
miRNA:   3'- aAGGCUGG---------CGU-CGCaCGGGCAGaCCG- -5'
16131 5' -61 NC_004065.1 + 229536 0.66 0.793697
Target:  5'- cUUCCGcggaCGCGGCGcgcgGCCCGga-GGCu -3'
miRNA:   3'- -AAGGCug--GCGUCGCa---CGGGCagaCCG- -5'
16131 5' -61 NC_004065.1 + 119634 0.67 0.702666
Target:  5'- -gUCGGCCGUGGCGUGUUCGaacGGCc -3'
miRNA:   3'- aaGGCUGGCGUCGCACGGGCagaCCG- -5'
16131 5' -61 NC_004065.1 + 94383 0.68 0.693141
Target:  5'- --aCGGCCGCGGCGagcUGUCgG-CUGGUg -3'
miRNA:   3'- aagGCUGGCGUCGC---ACGGgCaGACCG- -5'
16131 5' -61 NC_004065.1 + 163718 0.73 0.398626
Target:  5'- gUCCGccgcgaucuuCCGCAGCGUGUCCGUgaacucgGGCa -3'
miRNA:   3'- aAGGCu---------GGCGUCGCACGGGCAga-----CCG- -5'
16131 5' -61 NC_004065.1 + 198871 0.72 0.414118
Target:  5'- cUCCGGCCGCGGCGgugucgaUGCCCGagUcGGa -3'
miRNA:   3'- aAGGCUGGCGUCGC-------ACGGGCagA-CCg -5'
16131 5' -61 NC_004065.1 + 30020 0.72 0.456592
Target:  5'- --aCGACCGCGGU--GCCCGUCaagcuggUGGCg -3'
miRNA:   3'- aagGCUGGCGUCGcaCGGGCAG-------ACCG- -5'
16131 5' -61 NC_004065.1 + 140674 0.72 0.457466
Target:  5'- -cCCGGCCuGCGGCcugucGUGCCuCGaguUCUGGCa -3'
miRNA:   3'- aaGGCUGG-CGUCG-----CACGG-GC---AGACCG- -5'
16131 5' -61 NC_004065.1 + 209546 0.71 0.466249
Target:  5'- -cCCGACCGCGGgacugaaGgagGCCCGgccggcugCUGGCg -3'
miRNA:   3'- aaGGCUGGCGUCg------Ca--CGGGCa-------GACCG- -5'
16131 5' -61 NC_004065.1 + 77845 0.71 0.484071
Target:  5'- cUCCGGaCGCGGCGUGggcucCCCGgugcacaugCUGGCa -3'
miRNA:   3'- aAGGCUgGCGUCGCAC-----GGGCa--------GACCG- -5'
16131 5' -61 NC_004065.1 + 96055 0.71 0.510475
Target:  5'- -cCCGGCCGCcgauauaGGCuUGCCCGUCcgcgGGUc -3'
miRNA:   3'- aaGGCUGGCG-------UCGcACGGGCAGa---CCG- -5'
16131 5' -61 NC_004065.1 + 119508 0.7 0.549718
Target:  5'- -gUCGugCGCGGCGaGCCUGUCgacauccuuguccggGGCg -3'
miRNA:   3'- aaGGCugGCGUCGCaCGGGCAGa--------------CCG- -5'
16131 5' -61 NC_004065.1 + 88810 0.7 0.558254
Target:  5'- --aUGACCGCAcGCGgaucUGCCUGUCgucGGCg -3'
miRNA:   3'- aagGCUGGCGU-CGC----ACGGGCAGa--CCG- -5'
16131 5' -61 NC_004065.1 + 656 0.7 0.558254
Target:  5'- gUCCGGCCGC-GCGUagcgagcacccGCUCG-CUGGUc -3'
miRNA:   3'- aAGGCUGGCGuCGCA-----------CGGGCaGACCG- -5'
16131 5' -61 NC_004065.1 + 83320 0.69 0.635296
Target:  5'- -gUCGAgCGCGGCGUcGCCCauGUCgugGGUa -3'
miRNA:   3'- aaGGCUgGCGUCGCA-CGGG--CAGa--CCG- -5'
16131 5' -61 NC_004065.1 + 162169 0.68 0.661427
Target:  5'- -gCCGGCUGCGGCGcagcgucuucgccgUGCCCuUCUGcuGCg -3'
miRNA:   3'- aaGGCUGGCGUCGC--------------ACGGGcAGAC--CG- -5'
16131 5' -61 NC_004065.1 + 207979 0.68 0.673
Target:  5'- -aCCGgagggauACCGCGGCcUGCCCGg--GGCc -3'
miRNA:   3'- aaGGC-------UGGCGUCGcACGGGCagaCCG- -5'
16131 5' -61 NC_004065.1 + 170448 0.68 0.683571
Target:  5'- -gUCGACCaugcGCAGuCGcUGCCCGUCgccaucGGCu -3'
miRNA:   3'- aaGGCUGG----CGUC-GC-ACGGGCAGa-----CCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.