miRNA display CGI


Results 1 - 20 of 62 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16131 5' -61 NC_004065.1 + 116720 0.78 0.210936
Target:  5'- gUCCGGCgcgcgaGCGGCGUcGCCCGUCaUGGUg -3'
miRNA:   3'- aAGGCUGg-----CGUCGCA-CGGGCAG-ACCG- -5'
16131 5' -61 NC_004065.1 + 164378 0.67 0.712137
Target:  5'- cUgCGGCgGCAGCGgcagcggGUCCGUCaGGUc -3'
miRNA:   3'- aAgGCUGgCGUCGCa------CGGGCAGaCCG- -5'
16131 5' -61 NC_004065.1 + 35382 0.67 0.721548
Target:  5'- -gCUGGCCGaGGCGUGgaCCGUCaucGGCg -3'
miRNA:   3'- aaGGCUGGCgUCGCACg-GGCAGa--CCG- -5'
16131 5' -61 NC_004065.1 + 165150 0.66 0.802207
Target:  5'- cUCCGACgCGCGccGCG-GUCCGcaggaUGGCg -3'
miRNA:   3'- aAGGCUG-GCGU--CGCaCGGGCag---ACCG- -5'
16131 5' -61 NC_004065.1 + 140674 0.72 0.457466
Target:  5'- -cCCGGCCuGCGGCcugucGUGCCuCGaguUCUGGCa -3'
miRNA:   3'- aaGGCUGG-CGUCG-----CACGG-GC---AGACCG- -5'
16131 5' -61 NC_004065.1 + 209546 0.71 0.466249
Target:  5'- -cCCGACCGCGGgacugaaGgagGCCCGgccggcugCUGGCg -3'
miRNA:   3'- aaGGCUGGCGUCg------Ca--CGGGCa-------GACCG- -5'
16131 5' -61 NC_004065.1 + 96055 0.71 0.510475
Target:  5'- -cCCGGCCGCcgauauaGGCuUGCCCGUCcgcgGGUc -3'
miRNA:   3'- aaGGCUGGCG-------UCGcACGGGCAGa---CCG- -5'
16131 5' -61 NC_004065.1 + 119508 0.7 0.549718
Target:  5'- -gUCGugCGCGGCGaGCCUGUCgacauccuuguccggGGCg -3'
miRNA:   3'- aaGGCugGCGUCGCaCGGGCAGa--------------CCG- -5'
16131 5' -61 NC_004065.1 + 83320 0.69 0.635296
Target:  5'- -gUCGAgCGCGGCGUcGCCCauGUCgugGGUa -3'
miRNA:   3'- aaGGCUgGCGUCGCA-CGGG--CAGa--CCG- -5'
16131 5' -61 NC_004065.1 + 119634 0.67 0.702666
Target:  5'- -gUCGGCCGUGGCGUGUUCGaacGGCc -3'
miRNA:   3'- aaGGCUGGCGUCGCACGGGCagaCCG- -5'
16131 5' -61 NC_004065.1 + 207979 0.68 0.673
Target:  5'- -aCCGgagggauACCGCGGCcUGCCCGg--GGCc -3'
miRNA:   3'- aaGGC-------UGGCGUCGcACGGGCagaCCG- -5'
16131 5' -61 NC_004065.1 + 656 0.7 0.558254
Target:  5'- gUCCGGCCGC-GCGUagcgagcacccGCUCG-CUGGUc -3'
miRNA:   3'- aAGGCUGGCGuCGCA-----------CGGGCaGACCG- -5'
16131 5' -61 NC_004065.1 + 163718 0.73 0.398626
Target:  5'- gUCCGccgcgaucuuCCGCAGCGUGUCCGUgaacucgGGCa -3'
miRNA:   3'- aAGGCu---------GGCGUCGCACGGGCAga-----CCG- -5'
16131 5' -61 NC_004065.1 + 170448 0.68 0.683571
Target:  5'- -gUCGACCaugcGCAGuCGcUGCCCGUCgccaucGGCu -3'
miRNA:   3'- aaGGCUGG----CGUC-GC-ACGGGCAGa-----CCG- -5'
16131 5' -61 NC_004065.1 + 198871 0.72 0.414118
Target:  5'- cUCCGGCCGCGGCGgugucgaUGCCCGagUcGGa -3'
miRNA:   3'- aAGGCUGGCGUCGC-------ACGGGCagA-CCg -5'
16131 5' -61 NC_004065.1 + 88810 0.7 0.558254
Target:  5'- --aUGACCGCAcGCGgaucUGCCUGUCgucGGCg -3'
miRNA:   3'- aagGCUGGCGU-CGC----ACGGGCAGa--CCG- -5'
16131 5' -61 NC_004065.1 + 94383 0.68 0.693141
Target:  5'- --aCGGCCGCGGCGagcUGUCgG-CUGGUg -3'
miRNA:   3'- aagGCUGGCGUCGC---ACGGgCaGACCG- -5'
16131 5' -61 NC_004065.1 + 165110 0.67 0.712137
Target:  5'- cUCUGAg-GCGGCGUcccGCCCGgcgaCUGGCg -3'
miRNA:   3'- aAGGCUggCGUCGCA---CGGGCa---GACCG- -5'
16131 5' -61 NC_004065.1 + 30020 0.72 0.456592
Target:  5'- --aCGACCGCGGU--GCCCGUCaagcuggUGGCg -3'
miRNA:   3'- aagGCUGGCGUCGcaCGGGCAG-------ACCG- -5'
16131 5' -61 NC_004065.1 + 77845 0.71 0.484071
Target:  5'- cUCCGGaCGCGGCGUGggcucCCCGgugcacaugCUGGCa -3'
miRNA:   3'- aAGGCUgGCGUCGCAC-----GGGCa--------GACCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.