Results 21 - 40 of 62 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
16131 | 5' | -61 | NC_004065.1 | + | 150782 | 0.67 | 0.740154 |
Target: 5'- -aUCGcGCCGuCAGCGUGaUCCG-CUGGUg -3' miRNA: 3'- aaGGC-UGGC-GUCGCAC-GGGCaGACCG- -5' |
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16131 | 5' | -61 | NC_004065.1 | + | 165110 | 0.67 | 0.712137 |
Target: 5'- cUCUGAg-GCGGCGUcccGCCCGgcgaCUGGCg -3' miRNA: 3'- aAGGCUggCGUCGCA---CGGGCa---GACCG- -5' |
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16131 | 5' | -61 | NC_004065.1 | + | 94383 | 0.68 | 0.693141 |
Target: 5'- --aCGGCCGCGGCGagcUGUCgG-CUGGUg -3' miRNA: 3'- aagGCUGGCGUCGC---ACGGgCaGACCG- -5' |
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16131 | 5' | -61 | NC_004065.1 | + | 120150 | 0.66 | 0.793697 |
Target: 5'- --gCGGCCGCGGCGacGCCgGU--GGCa -3' miRNA: 3'- aagGCUGGCGUCGCa-CGGgCAgaCCG- -5' |
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16131 | 5' | -61 | NC_004065.1 | + | 211898 | 0.67 | 0.721548 |
Target: 5'- -cCCGucCCGCGGCGgGCCCGga-GGUu -3' miRNA: 3'- aaGGCu-GGCGUCGCaCGGGCagaCCG- -5' |
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16131 | 5' | -61 | NC_004065.1 | + | 170448 | 0.68 | 0.683571 |
Target: 5'- -gUCGACCaugcGCAGuCGcUGCCCGUCgccaucGGCu -3' miRNA: 3'- aaGGCUGG----CGUC-GC-ACGGGCAGa-----CCG- -5' |
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16131 | 5' | -61 | NC_004065.1 | + | 82419 | 0.66 | 0.793697 |
Target: 5'- --aCGACCGCGGUGU--UgGUCUGGUc -3' miRNA: 3'- aagGCUGGCGUCGCAcgGgCAGACCG- -5' |
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16131 | 5' | -61 | NC_004065.1 | + | 207979 | 0.68 | 0.673 |
Target: 5'- -aCCGgagggauACCGCGGCcUGCCCGg--GGCc -3' miRNA: 3'- aaGGC-------UGGCGUCGcACGGGCagaCCG- -5' |
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16131 | 5' | -61 | NC_004065.1 | + | 161286 | 0.66 | 0.767411 |
Target: 5'- gUCCGAguCCgGCAGCGacCCCGUCaGGa -3' miRNA: 3'- aAGGCU--GG-CGUCGCacGGGCAGaCCg -5' |
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16131 | 5' | -61 | NC_004065.1 | + | 154577 | 0.66 | 0.793697 |
Target: 5'- cUCUGGCUccucuacugGCAuGCG-GCCCGUUcGGCg -3' miRNA: 3'- aAGGCUGG---------CGU-CGCaCGGGCAGaCCG- -5' |
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16131 | 5' | -61 | NC_004065.1 | + | 162169 | 0.68 | 0.661427 |
Target: 5'- -gCCGGCUGCGGCGcagcgucuucgccgUGCCCuUCUGcuGCg -3' miRNA: 3'- aaGGCUGGCGUCGC--------------ACGGGcAGAC--CG- -5' |
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16131 | 5' | -61 | NC_004065.1 | + | 164378 | 0.67 | 0.712137 |
Target: 5'- cUgCGGCgGCAGCGgcagcggGUCCGUCaGGUc -3' miRNA: 3'- aAgGCUGgCGUCGCa------CGGGCAGaCCG- -5' |
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16131 | 5' | -61 | NC_004065.1 | + | 119634 | 0.67 | 0.702666 |
Target: 5'- -gUCGGCCGUGGCGUGUUCGaacGGCc -3' miRNA: 3'- aaGGCUGGCGUCGCACGGGCagaCCG- -5' |
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16131 | 5' | -61 | NC_004065.1 | + | 118159 | 0.68 | 0.683571 |
Target: 5'- gUCaccgaGACCGCGGCGgcGgCCGUCacGGCu -3' miRNA: 3'- aAGg----CUGGCGUCGCa-CgGGCAGa-CCG- -5' |
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16131 | 5' | -61 | NC_004065.1 | + | 64645 | 0.68 | 0.654662 |
Target: 5'- -aUCGACCGC-GCGUcCgCCGUgCUGGCc -3' miRNA: 3'- aaGGCUGGCGuCGCAcG-GGCA-GACCG- -5' |
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16131 | 5' | -61 | NC_004065.1 | + | 43470 | 0.68 | 0.644983 |
Target: 5'- aUCCG-CCGCAGCacGUGUCC-UC-GGCg -3' miRNA: 3'- aAGGCuGGCGUCG--CACGGGcAGaCCG- -5' |
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16131 | 5' | -61 | NC_004065.1 | + | 125604 | 0.69 | 0.59659 |
Target: 5'- -gCCGugCGCGGCGggucgaUGCgCGcCUGGUa -3' miRNA: 3'- aaGGCugGCGUCGC------ACGgGCaGACCG- -5' |
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16131 | 5' | -61 | NC_004065.1 | + | 38011 | 0.66 | 0.791118 |
Target: 5'- -aCCGACCGUgaccacgGGUG-GCCCGcacaccauccugCUGGCc -3' miRNA: 3'- aaGGCUGGCG-------UCGCaCGGGCa-----------GACCG- -5' |
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16131 | 5' | -61 | NC_004065.1 | + | 99666 | 0.66 | 0.793697 |
Target: 5'- -aUCGGCUguGCAGCaucaGCCCG-CUGGCc -3' miRNA: 3'- aaGGCUGG--CGUCGca--CGGGCaGACCG- -5' |
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16131 | 5' | -61 | NC_004065.1 | + | 127149 | 0.66 | 0.793697 |
Target: 5'- -aCCGGCgGCGGCGaucGCCC-UCUcGGUc -3' miRNA: 3'- aaGGCUGgCGUCGCa--CGGGcAGA-CCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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