Results 1 - 20 of 138 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
16133 | 3' | -57.6 | NC_004065.1 | + | 21979 | 0.66 | 0.9284 |
Target: 5'- gGACGGUGAGGGcCGCcacGGccACGCc -3' miRNA: 3'- gCUGCCGCUCCUcGCGu--CCuuUGCGu -5' |
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16133 | 3' | -57.6 | NC_004065.1 | + | 229473 | 0.66 | 0.9284 |
Target: 5'- cCGuuGcGCGAacagGGGGCGCucgcacAGGggGCGCGc -3' miRNA: 3'- -GCugC-CGCU----CCUCGCG------UCCuuUGCGU- -5' |
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16133 | 3' | -57.6 | NC_004065.1 | + | 211149 | 0.66 | 0.927895 |
Target: 5'- cCGuuCGGgGGGGAGCGggcgugcCGGGAuguCGCAc -3' miRNA: 3'- -GCu-GCCgCUCCUCGC-------GUCCUuu-GCGU- -5' |
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16133 | 3' | -57.6 | NC_004065.1 | + | 225384 | 0.66 | 0.923244 |
Target: 5'- -cGCGGCG-GGGGCGCuGGcgcuGAugGUg -3' miRNA: 3'- gcUGCCGCuCCUCGCGuCC----UUugCGu -5' |
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16133 | 3' | -57.6 | NC_004065.1 | + | 41484 | 0.66 | 0.923244 |
Target: 5'- -aGCGuGCGccGGGGCGUcgggacGGGGAGCGCGc -3' miRNA: 3'- gcUGC-CGCu-CCUCGCG------UCCUUUGCGU- -5' |
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16133 | 3' | -57.6 | NC_004065.1 | + | 133827 | 0.66 | 0.923244 |
Target: 5'- -uGCGGC--GGAGUGUauAGGAGACGUg -3' miRNA: 3'- gcUGCCGcuCCUCGCG--UCCUUUGCGu -5' |
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16133 | 3' | -57.6 | NC_004065.1 | + | 205444 | 0.66 | 0.923244 |
Target: 5'- uGGCGGCGAcGAcacGCGCGGaccGCGCGa -3' miRNA: 3'- gCUGCCGCUcCU---CGCGUCcuuUGCGU- -5' |
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16133 | 3' | -57.6 | NC_004065.1 | + | 79326 | 0.66 | 0.923244 |
Target: 5'- cCGGCGGCGGuucGuGCGCGcGGAGgacgagggcgGCGCGg -3' miRNA: 3'- -GCUGCCGCUc--CuCGCGU-CCUU----------UGCGU- -5' |
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16133 | 3' | -57.6 | NC_004065.1 | + | 137409 | 0.66 | 0.923244 |
Target: 5'- gGugGGCGuaccuaguuuaGGGGGCGUgguuccggGGGuuGCGCu -3' miRNA: 3'- gCugCCGC-----------UCCUCGCG--------UCCuuUGCGu -5' |
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16133 | 3' | -57.6 | NC_004065.1 | + | 74701 | 0.66 | 0.923244 |
Target: 5'- cCGAUGGggaUGAGGaAGCGCGGGcgccuGCGaCAg -3' miRNA: 3'- -GCUGCC---GCUCC-UCGCGUCCuu---UGC-GU- -5' |
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16133 | 3' | -57.6 | NC_004065.1 | + | 44519 | 0.66 | 0.923244 |
Target: 5'- cCGGCGGCGcgauguuaccGGGGaCGguGGcgGCGCu -3' miRNA: 3'- -GCUGCCGCu---------CCUC-GCguCCuuUGCGu -5' |
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16133 | 3' | -57.6 | NC_004065.1 | + | 108938 | 0.66 | 0.923244 |
Target: 5'- uGACGGUGGuccaGAGCuCGGGAGugGUg -3' miRNA: 3'- gCUGCCGCUc---CUCGcGUCCUUugCGu -5' |
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16133 | 3' | -57.6 | NC_004065.1 | + | 182505 | 0.66 | 0.917867 |
Target: 5'- gGGCGGUGgucccaauAGGGGCGguGGucccaaucaaGAugGCGg -3' miRNA: 3'- gCUGCCGC--------UCCUCGCguCC----------UUugCGU- -5' |
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16133 | 3' | -57.6 | NC_004065.1 | + | 157182 | 0.66 | 0.917867 |
Target: 5'- aCGGCGuucuguccuguuGUGGGGGGUuagucaGCAGGugGCGCAa -3' miRNA: 3'- -GCUGC------------CGCUCCUCG------CGUCCuuUGCGU- -5' |
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16133 | 3' | -57.6 | NC_004065.1 | + | 68891 | 0.66 | 0.917867 |
Target: 5'- aGACGGcCGAGGugaAGCuGgAGGuGACGCc -3' miRNA: 3'- gCUGCC-GCUCC---UCG-CgUCCuUUGCGu -5' |
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16133 | 3' | -57.6 | NC_004065.1 | + | 132704 | 0.66 | 0.912271 |
Target: 5'- cCGACGGgGucGGGGCGgCuGGuuACGUAu -3' miRNA: 3'- -GCUGCCgCu-CCUCGC-GuCCuuUGCGU- -5' |
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16133 | 3' | -57.6 | NC_004065.1 | + | 96750 | 0.66 | 0.912271 |
Target: 5'- gCGAgGGCGAGcaGGGCGaCGgcGGAGGCgGCAu -3' miRNA: 3'- -GCUgCCGCUC--CUCGC-GU--CCUUUG-CGU- -5' |
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16133 | 3' | -57.6 | NC_004065.1 | + | 19756 | 0.66 | 0.912271 |
Target: 5'- aCGGgGGCGugcGGGGGUGUGGGcGACGgAg -3' miRNA: 3'- -GCUgCCGC---UCCUCGCGUCCuUUGCgU- -5' |
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16133 | 3' | -57.6 | NC_004065.1 | + | 171967 | 0.66 | 0.912271 |
Target: 5'- uGGCGGCGGcGGcGGCGgAGGGGuCGUc -3' miRNA: 3'- gCUGCCGCU-CC-UCGCgUCCUUuGCGu -5' |
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16133 | 3' | -57.6 | NC_004065.1 | + | 4383 | 0.66 | 0.912271 |
Target: 5'- gCGGCGGCGGgagccGGAGUGCuguucGGAgcgGugGCc -3' miRNA: 3'- -GCUGCCGCU-----CCUCGCGu----CCU---UugCGu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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