miRNA display CGI


Results 1 - 20 of 138 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16133 3' -57.6 NC_004065.1 + 225384 0.66 0.923244
Target:  5'- -cGCGGCG-GGGGCGCuGGcgcuGAugGUg -3'
miRNA:   3'- gcUGCCGCuCCUCGCGuCC----UUugCGu -5'
16133 3' -57.6 NC_004065.1 + 19756 0.66 0.912271
Target:  5'- aCGGgGGCGugcGGGGGUGUGGGcGACGgAg -3'
miRNA:   3'- -GCUgCCGC---UCCUCGCGUCCuUUGCgU- -5'
16133 3' -57.6 NC_004065.1 + 120555 0.66 0.906456
Target:  5'- cCGGCGGCGGucggcGcGAGCggGCGGGAccuccGGCGCc -3'
miRNA:   3'- -GCUGCCGCU-----C-CUCG--CGUCCU-----UUGCGu -5'
16133 3' -57.6 NC_004065.1 + 21979 0.66 0.9284
Target:  5'- gGACGGUGAGGGcCGCcacGGccACGCc -3'
miRNA:   3'- gCUGCCGCUCCUcGCGu--CCuuUGCGu -5'
16133 3' -57.6 NC_004065.1 + 133827 0.66 0.923244
Target:  5'- -uGCGGC--GGAGUGUauAGGAGACGUg -3'
miRNA:   3'- gcUGCCGcuCCUCGCG--UCCUUUGCGu -5'
16133 3' -57.6 NC_004065.1 + 96750 0.66 0.912271
Target:  5'- gCGAgGGCGAGcaGGGCGaCGgcGGAGGCgGCAu -3'
miRNA:   3'- -GCUgCCGCUC--CUCGC-GU--CCUUUG-CGU- -5'
16133 3' -57.6 NC_004065.1 + 229473 0.66 0.9284
Target:  5'- cCGuuGcGCGAacagGGGGCGCucgcacAGGggGCGCGc -3'
miRNA:   3'- -GCugC-CGCU----CCUCGCG------UCCuuUGCGU- -5'
16133 3' -57.6 NC_004065.1 + 74701 0.66 0.923244
Target:  5'- cCGAUGGggaUGAGGaAGCGCGGGcgccuGCGaCAg -3'
miRNA:   3'- -GCUGCC---GCUCC-UCGCGUCCuu---UGC-GU- -5'
16133 3' -57.6 NC_004065.1 + 182505 0.66 0.917867
Target:  5'- gGGCGGUGgucccaauAGGGGCGguGGucccaaucaaGAugGCGg -3'
miRNA:   3'- gCUGCCGC--------UCCUCGCguCC----------UUugCGU- -5'
16133 3' -57.6 NC_004065.1 + 69308 0.66 0.912271
Target:  5'- aGGCGGUGAcGGGCauGCuGGAGaACGCGc -3'
miRNA:   3'- gCUGCCGCUcCUCG--CGuCCUU-UGCGU- -5'
16133 3' -57.6 NC_004065.1 + 206527 0.66 0.906456
Target:  5'- aGACGGCGAu-AGCGCGG---ACGCGa -3'
miRNA:   3'- gCUGCCGCUccUCGCGUCcuuUGCGU- -5'
16133 3' -57.6 NC_004065.1 + 68891 0.66 0.917867
Target:  5'- aGACGGcCGAGGugaAGCuGgAGGuGACGCc -3'
miRNA:   3'- gCUGCC-GCUCC---UCG-CgUCCuUUGCGu -5'
16133 3' -57.6 NC_004065.1 + 132704 0.66 0.912271
Target:  5'- cCGACGGgGucGGGGCGgCuGGuuACGUAu -3'
miRNA:   3'- -GCUGCCgCu-CCUCGC-GuCCuuUGCGU- -5'
16133 3' -57.6 NC_004065.1 + 44519 0.66 0.923244
Target:  5'- cCGGCGGCGcgauguuaccGGGGaCGguGGcgGCGCu -3'
miRNA:   3'- -GCUGCCGCu---------CCUC-GCguCCuuUGCGu -5'
16133 3' -57.6 NC_004065.1 + 211149 0.66 0.927895
Target:  5'- cCGuuCGGgGGGGAGCGggcgugcCGGGAuguCGCAc -3'
miRNA:   3'- -GCu-GCCgCUCCUCGC-------GUCCUuu-GCGU- -5'
16133 3' -57.6 NC_004065.1 + 41484 0.66 0.923244
Target:  5'- -aGCGuGCGccGGGGCGUcgggacGGGGAGCGCGc -3'
miRNA:   3'- gcUGC-CGCu-CCUCGCG------UCCUUUGCGU- -5'
16133 3' -57.6 NC_004065.1 + 28784 0.66 0.912271
Target:  5'- uGACGGUGAcGGAGgagaacagcuCGCGGGuccucugcACGCAc -3'
miRNA:   3'- gCUGCCGCU-CCUC----------GCGUCCuu------UGCGU- -5'
16133 3' -57.6 NC_004065.1 + 81077 0.66 0.906456
Target:  5'- -aAUGGUuAGGGGCGCcauGGAggUGCAc -3'
miRNA:   3'- gcUGCCGcUCCUCGCGu--CCUuuGCGU- -5'
16133 3' -57.6 NC_004065.1 + 70968 0.66 0.906456
Target:  5'- aGACGGCGccGGAGCacacgaGGGAAuCGCu -3'
miRNA:   3'- gCUGCCGCu-CCUCGcg----UCCUUuGCGu -5'
16133 3' -57.6 NC_004065.1 + 109201 0.66 0.905863
Target:  5'- gCGGCGGCGccucGGccucuuccugcucGGCGaCGGGAGACgGCGg -3'
miRNA:   3'- -GCUGCCGCu---CC-------------UCGC-GUCCUUUG-CGU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.