miRNA display CGI


Results 21 - 40 of 138 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16133 3' -57.6 NC_004065.1 + 28784 0.66 0.912271
Target:  5'- uGACGGUGAcGGAGgagaacagcuCGCGGGuccucugcACGCAc -3'
miRNA:   3'- gCUGCCGCU-CCUC----------GCGUCCuu------UGCGU- -5'
16133 3' -57.6 NC_004065.1 + 109201 0.66 0.905863
Target:  5'- gCGGCGGCGccucGGccucuuccugcucGGCGaCGGGAGACgGCGg -3'
miRNA:   3'- -GCUGCCGCu---CC-------------UCGC-GUCCUUUG-CGU- -5'
16133 3' -57.6 NC_004065.1 + 70968 0.66 0.906456
Target:  5'- aGACGGCGccGGAGCacacgaGGGAAuCGCu -3'
miRNA:   3'- gCUGCCGCu-CCUCGcg----UCCUUuGCGu -5'
16133 3' -57.6 NC_004065.1 + 206527 0.66 0.906456
Target:  5'- aGACGGCGAu-AGCGCGG---ACGCGa -3'
miRNA:   3'- gCUGCCGCUccUCGCGUCcuuUGCGU- -5'
16133 3' -57.6 NC_004065.1 + 120555 0.66 0.906456
Target:  5'- cCGGCGGCGGucggcGcGAGCggGCGGGAccuccGGCGCc -3'
miRNA:   3'- -GCUGCCGCU-----C-CUCG--CGUCCU-----UUGCGu -5'
16133 3' -57.6 NC_004065.1 + 19756 0.66 0.912271
Target:  5'- aCGGgGGCGugcGGGGGUGUGGGcGACGgAg -3'
miRNA:   3'- -GCUgCCGC---UCCUCGCGUCCuUUGCgU- -5'
16133 3' -57.6 NC_004065.1 + 69308 0.66 0.912271
Target:  5'- aGGCGGUGAcGGGCauGCuGGAGaACGCGc -3'
miRNA:   3'- gCUGCCGCUcCUCG--CGuCCUU-UGCGU- -5'
16133 3' -57.6 NC_004065.1 + 137409 0.66 0.923244
Target:  5'- gGugGGCGuaccuaguuuaGGGGGCGUgguuccggGGGuuGCGCu -3'
miRNA:   3'- gCugCCGC-----------UCCUCGCG--------UCCuuUGCGu -5'
16133 3' -57.6 NC_004065.1 + 146816 0.67 0.872084
Target:  5'- cCGGCGGCGcgcacGGGGGacucgagagcgggcCGCcGGGAGCGCc -3'
miRNA:   3'- -GCUGCCGC-----UCCUC--------------GCGuCCUUUGCGu -5'
16133 3' -57.6 NC_004065.1 + 75783 0.67 0.88772
Target:  5'- aGGCGGCGgucggcgaggGGGAGCGgCGGcGAGGCa-- -3'
miRNA:   3'- gCUGCCGC----------UCCUCGC-GUC-CUUUGcgu -5'
16133 3' -57.6 NC_004065.1 + 227887 0.67 0.867115
Target:  5'- aCGGCGGaCGAGGAuCGCuccgAGGAuAGCGUu -3'
miRNA:   3'- -GCUGCC-GCUCCUcGCG----UCCU-UUGCGu -5'
16133 3' -57.6 NC_004065.1 + 109842 0.67 0.874185
Target:  5'- -uGCGGCGGGGGgccaucGCGCAGGugccGgGCGg -3'
miRNA:   3'- gcUGCCGCUCCU------CGCGUCCuu--UgCGU- -5'
16133 3' -57.6 NC_004065.1 + 75357 0.67 0.88772
Target:  5'- uCGACGGUgcccgaGAGGAGCaGCuGGAggUGa- -3'
miRNA:   3'- -GCUGCCG------CUCCUCG-CGuCCUuuGCgu -5'
16133 3' -57.6 NC_004065.1 + 128911 0.67 0.894178
Target:  5'- gCGAgGGCGAGGgcuccguuuacGGCGCAcguaagaucaucGGcGGGCGCGa -3'
miRNA:   3'- -GCUgCCGCUCC-----------UCGCGU------------CC-UUUGCGU- -5'
16133 3' -57.6 NC_004065.1 + 120345 0.67 0.883746
Target:  5'- uCGGCGGCGAugucgucgGaGAGCGCccGGAGgacccugccggagucGCGCAg -3'
miRNA:   3'- -GCUGCCGCU--------C-CUCGCGu-CCUU---------------UGCGU- -5'
16133 3' -57.6 NC_004065.1 + 105369 0.67 0.879015
Target:  5'- uGACGGCGGacccGGAcucgcugacggccgGCG-AGGAGGCGCu -3'
miRNA:   3'- gCUGCCGCU----CCU--------------CGCgUCCUUUGCGu -5'
16133 3' -57.6 NC_004065.1 + 184783 0.67 0.873487
Target:  5'- aGACGacGCGAcGGGCGgAGGAggacgguGACGCAa -3'
miRNA:   3'- gCUGC--CGCUcCUCGCgUCCU-------UUGCGU- -5'
16133 3' -57.6 NC_004065.1 + 161827 0.67 0.900424
Target:  5'- gGACGGaCGGGcGGGCGgAcGGGGACGgGu -3'
miRNA:   3'- gCUGCC-GCUC-CUCGCgU-CCUUUGCgU- -5'
16133 3' -57.6 NC_004065.1 + 65066 0.67 0.900424
Target:  5'- gGGCGGCGAGGGGggauCGCGacaGAuacACGCGu -3'
miRNA:   3'- gCUGCCGCUCCUC----GCGUc--CUu--UGCGU- -5'
16133 3' -57.6 NC_004065.1 + 152671 0.67 0.894178
Target:  5'- aCGGCGGCGAcGGcGCGaGGGAcACGa- -3'
miRNA:   3'- -GCUGCCGCU-CCuCGCgUCCUuUGCgu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.