Results 41 - 60 of 138 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
16133 | 3' | -57.6 | NC_004065.1 | + | 127222 | 0.67 | 0.874185 |
Target: 5'- gCGGCGGCcgcGAGGAucgggcGCGguGGcggggaugauGAGCGCGa -3' miRNA: 3'- -GCUGCCG---CUCCU------CGCguCC----------UUUGCGU- -5' |
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16133 | 3' | -57.6 | NC_004065.1 | + | 109842 | 0.67 | 0.874185 |
Target: 5'- -uGCGGCGGGGGgccaucGCGCAGGugccGgGCGg -3' miRNA: 3'- gcUGCCGCUCCU------CGCGUCCuu--UgCGU- -5' |
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16133 | 3' | -57.6 | NC_004065.1 | + | 119614 | 0.67 | 0.88772 |
Target: 5'- cCGGCGGCgGAGGAGaCGCcgucGGccguGGCGUg -3' miRNA: 3'- -GCUGCCG-CUCCUC-GCGu---CCu---UUGCGu -5' |
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16133 | 3' | -57.6 | NC_004065.1 | + | 144503 | 0.67 | 0.885742 |
Target: 5'- aGACGGCGAcuucGGGCGCggcgaccggaaagaAGGAAgccACGCc -3' miRNA: 3'- gCUGCCGCUc---CUCGCG--------------UCCUU---UGCGu -5' |
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16133 | 3' | -57.6 | NC_004065.1 | + | 105369 | 0.67 | 0.879015 |
Target: 5'- uGACGGCGGacccGGAcucgcugacggccgGCG-AGGAGGCGCu -3' miRNA: 3'- gCUGCCGCU----CCU--------------CGCgUCCUUUGCGu -5' |
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16133 | 3' | -57.6 | NC_004065.1 | + | 184783 | 0.67 | 0.873487 |
Target: 5'- aGACGacGCGAcGGGCGgAGGAggacgguGACGCAa -3' miRNA: 3'- gCUGC--CGCUcCUCGCgUCCU-------UUGCGU- -5' |
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16133 | 3' | -57.6 | NC_004065.1 | + | 146816 | 0.67 | 0.872084 |
Target: 5'- cCGGCGGCGcgcacGGGGGacucgagagcgggcCGCcGGGAGCGCc -3' miRNA: 3'- -GCUGCCGC-----UCCUC--------------GCGuCCUUUGCGu -5' |
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16133 | 3' | -57.6 | NC_004065.1 | + | 195443 | 0.67 | 0.867115 |
Target: 5'- -aACGGCGucgcGGAGCGCAcGGucuGCGUc -3' miRNA: 3'- gcUGCCGCu---CCUCGCGU-CCuu-UGCGu -5' |
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16133 | 3' | -57.6 | NC_004065.1 | + | 121390 | 0.67 | 0.867115 |
Target: 5'- aGAUGcGCGuGGAgucGCGCAGcuGGCGCAg -3' miRNA: 3'- gCUGC-CGCuCCU---CGCGUCcuUUGCGU- -5' |
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16133 | 3' | -57.6 | NC_004065.1 | + | 210143 | 0.67 | 0.867115 |
Target: 5'- uCGGCGGCGAcGGGGUGgauCAGGGucucuaGCAc -3' miRNA: 3'- -GCUGCCGCU-CCUCGC---GUCCUuug---CGU- -5' |
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16133 | 3' | -57.6 | NC_004065.1 | + | 126269 | 0.67 | 0.866397 |
Target: 5'- gCGACGGUccgGAGGccccgccGCGCgaaccgacgccgaAGGAGGCGCGu -3' miRNA: 3'- -GCUGCCG---CUCCu------CGCG-------------UCCUUUGCGU- -5' |
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16133 | 3' | -57.6 | NC_004065.1 | + | 120345 | 0.67 | 0.883746 |
Target: 5'- uCGGCGGCGAugucgucgGaGAGCGCccGGAGgacccugccggagucGCGCAg -3' miRNA: 3'- -GCUGCCGCU--------C-CUCGCGu-CCUU---------------UGCGU- -5' |
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16133 | 3' | -57.6 | NC_004065.1 | + | 227887 | 0.67 | 0.867115 |
Target: 5'- aCGGCGGaCGAGGAuCGCuccgAGGAuAGCGUu -3' miRNA: 3'- -GCUGCC-GCUCCUcGCG----UCCU-UUGCGu -5' |
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16133 | 3' | -57.6 | NC_004065.1 | + | 129145 | 0.67 | 0.899809 |
Target: 5'- -cGCGGCGGaggagaacuaccuGGGGCGCAGccuGGACGCc -3' miRNA: 3'- gcUGCCGCU-------------CCUCGCGUCc--UUUGCGu -5' |
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16133 | 3' | -57.6 | NC_004065.1 | + | 44922 | 0.67 | 0.894178 |
Target: 5'- aGugGGCGGGGgucuGGCagagaugaGCAGGAAAaCGUu -3' miRNA: 3'- gCugCCGCUCC----UCG--------CGUCCUUU-GCGu -5' |
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16133 | 3' | -57.6 | NC_004065.1 | + | 34602 | 0.67 | 0.894178 |
Target: 5'- aCGACGGCGAc--GCgGCGGG-AGCGUAc -3' miRNA: 3'- -GCUGCCGCUccuCG-CGUCCuUUGCGU- -5' |
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16133 | 3' | -57.6 | NC_004065.1 | + | 114888 | 0.67 | 0.866397 |
Target: 5'- uGGCGGUGAccucucccuacccGGAGaGCGGGGAuaucccaaGCGCAc -3' miRNA: 3'- gCUGCCGCU-------------CCUCgCGUCCUU--------UGCGU- -5' |
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16133 | 3' | -57.6 | NC_004065.1 | + | 1218 | 0.68 | 0.836939 |
Target: 5'- aGAacGCGAcGGAGCGCAGGA--CGCc -3' miRNA: 3'- gCUgcCGCU-CCUCGCGUCCUuuGCGu -5' |
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16133 | 3' | -57.6 | NC_004065.1 | + | 25686 | 0.68 | 0.82895 |
Target: 5'- aGGCGGCGAGGuaguagauGGCGUcguccgGGGGccCGCGa -3' miRNA: 3'- gCUGCCGCUCC--------UCGCG------UCCUuuGCGU- -5' |
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16133 | 3' | -57.6 | NC_004065.1 | + | 24805 | 0.68 | 0.82895 |
Target: 5'- cCGAUGcagaGCGAGagcccuuucGGGUGguGGAGACGCAc -3' miRNA: 3'- -GCUGC----CGCUC---------CUCGCguCCUUUGCGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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