miRNA display CGI


Results 21 - 40 of 138 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16133 3' -57.6 NC_004065.1 + 112169 0.73 0.566329
Target:  5'- gGACGGCGGGGAGaaGgAGGGugUGCAg -3'
miRNA:   3'- gCUGCCGCUCCUCg-CgUCCUuuGCGU- -5'
16133 3' -57.6 NC_004065.1 + 53905 0.73 0.595546
Target:  5'- aGACGacGCGAGGAGCGCccgucAGGAuacCGCu -3'
miRNA:   3'- gCUGC--CGCUCCUCGCG-----UCCUuu-GCGu -5'
16133 3' -57.6 NC_004065.1 + 46887 0.72 0.615157
Target:  5'- uGACGGCGAGGAuGCacgGCuggAGGggGcCGCGa -3'
miRNA:   3'- gCUGCCGCUCCU-CG---CG---UCCuuU-GCGU- -5'
16133 3' -57.6 NC_004065.1 + 96274 0.72 0.624985
Target:  5'- gGACGGCGGGGcGGC-CAGGGgcgucacgGACGCc -3'
miRNA:   3'- gCUGCCGCUCC-UCGcGUCCU--------UUGCGu -5'
16133 3' -57.6 NC_004065.1 + 99189 0.72 0.624985
Target:  5'- uCGAUGGCGAGcAGuCGCAGGuAGACGg- -3'
miRNA:   3'- -GCUGCCGCUCcUC-GCGUCC-UUUGCgu -5'
16133 3' -57.6 NC_004065.1 + 33666 0.72 0.654467
Target:  5'- cCGGCGcGCGGGGAGgGCcgcuGcGAGAUGCGa -3'
miRNA:   3'- -GCUGC-CGCUCCUCgCGu---C-CUUUGCGU- -5'
16133 3' -57.6 NC_004065.1 + 228317 0.71 0.664272
Target:  5'- gGACGGCGGGugcuuuGGGCGguGG-GACGUAc -3'
miRNA:   3'- gCUGCCGCUC------CUCGCguCCuUUGCGU- -5'
16133 3' -57.6 NC_004065.1 + 61666 0.71 0.674053
Target:  5'- aCGAUGGCGGuguaGAGCGCgAGGGGucCGCAg -3'
miRNA:   3'- -GCUGCCGCUc---CUCGCG-UCCUUu-GCGU- -5'
16133 3' -57.6 NC_004065.1 + 172087 0.71 0.703173
Target:  5'- uGugGGUgGAGGGGC-CGGGGGAgGCGg -3'
miRNA:   3'- gCugCCG-CUCCUCGcGUCCUUUgCGU- -5'
16133 3' -57.6 NC_004065.1 + 200944 0.71 0.71278
Target:  5'- --cCGcCucGGAGCGCAGGGAGCGCGg -3'
miRNA:   3'- gcuGCcGcuCCUCGCGUCCUUUGCGU- -5'
16133 3' -57.6 NC_004065.1 + 74837 0.71 0.71278
Target:  5'- gGuCGGgacCGAGGGGCGCAGGuuGAgGCGg -3'
miRNA:   3'- gCuGCC---GCUCCUCGCGUCCu-UUgCGU- -5'
16133 3' -57.6 NC_004065.1 + 98674 0.71 0.71278
Target:  5'- uGACGGgGGGGAcgcccGCGC-GGAAAUGUg -3'
miRNA:   3'- gCUGCCgCUCCU-----CGCGuCCUUUGCGu -5'
16133 3' -57.6 NC_004065.1 + 30873 0.71 0.71278
Target:  5'- uCGACGGCGGGuucGAGCGCccgcagggcgucGGGGu-CGCAc -3'
miRNA:   3'- -GCUGCCGCUC---CUCGCG------------UCCUuuGCGU- -5'
16133 3' -57.6 NC_004065.1 + 37420 0.7 0.722324
Target:  5'- cCGACGGCGcguucacgcuGGAGCGCGuGGAaGACGg- -3'
miRNA:   3'- -GCUGCCGCu---------CCUCGCGU-CCU-UUGCgu -5'
16133 3' -57.6 NC_004065.1 + 80799 0.7 0.722324
Target:  5'- gCGGCGGCGGcGGcGGCaGCGGGAgcAGCGaCAg -3'
miRNA:   3'- -GCUGCCGCU-CC-UCG-CGUCCU--UUGC-GU- -5'
16133 3' -57.6 NC_004065.1 + 70506 0.7 0.730852
Target:  5'- gCGAUGGCGGcgcccuucucgacGGAGCuGCAGGcgcgccugcAGGCGCGa -3'
miRNA:   3'- -GCUGCCGCU-------------CCUCG-CGUCC---------UUUGCGU- -5'
16133 3' -57.6 NC_004065.1 + 200852 0.7 0.731796
Target:  5'- gGAguuCGGCGucgacGGGGGCGCGGGcGGugGCGa -3'
miRNA:   3'- gCU---GCCGC-----UCCUCGCGUCC-UUugCGU- -5'
16133 3' -57.6 NC_004065.1 + 156323 0.7 0.731796
Target:  5'- gCGGCGGCgGAGGAG-G-AGGAAGCgGCGg -3'
miRNA:   3'- -GCUGCCG-CUCCUCgCgUCCUUUG-CGU- -5'
16133 3' -57.6 NC_004065.1 + 113749 0.7 0.731796
Target:  5'- --cCGGCGAGGAG-GCcgAGGGAcaGCGCGg -3'
miRNA:   3'- gcuGCCGCUCCUCgCG--UCCUU--UGCGU- -5'
16133 3' -57.6 NC_004065.1 + 105480 0.7 0.731796
Target:  5'- aGGCGGcCGAGGAGCuGUuccaccuGGugGCGCAc -3'
miRNA:   3'- gCUGCC-GCUCCUCG-CGu------CCuuUGCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.