miRNA display CGI


Results 41 - 60 of 138 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16133 3' -57.6 NC_004065.1 + 46710 0.7 0.740253
Target:  5'- aGACGaaaucccuguuccGCGAGGucGCGCAcGAGGCGCAc -3'
miRNA:   3'- gCUGC-------------CGCUCCu-CGCGUcCUUUGCGU- -5'
16133 3' -57.6 NC_004065.1 + 130690 0.7 0.741188
Target:  5'- ---gGGCGAGGAgGCGgaggagaAGGAGGCGCGu -3'
miRNA:   3'- gcugCCGCUCCU-CGCg------UCCUUUGCGU- -5'
16133 3' -57.6 NC_004065.1 + 94630 0.7 0.741188
Target:  5'- uGACGGgGucGGGCGCGGccGGCGCGu -3'
miRNA:   3'- gCUGCCgCucCUCGCGUCcuUUGCGU- -5'
16133 3' -57.6 NC_004065.1 + 139857 0.7 0.749566
Target:  5'- gCGACGGCGGaggcggcGGAGCcggcgGCAGGAcgGACGa- -3'
miRNA:   3'- -GCUGCCGCU-------CCUCG-----CGUCCU--UUGCgu -5'
16133 3' -57.6 NC_004065.1 + 116337 0.7 0.750493
Target:  5'- gCGACGGCGucGGGAGagaaGCuGGAGA-GCGa -3'
miRNA:   3'- -GCUGCCGC--UCCUCg---CGuCCUUUgCGU- -5'
16133 3' -57.6 NC_004065.1 + 98393 0.7 0.759701
Target:  5'- uGGUGGCGAGGAGgGCGauGaGAGugGCGg -3'
miRNA:   3'- gCUGCCGCUCCUCgCGU--C-CUUugCGU- -5'
16133 3' -57.6 NC_004065.1 + 90050 0.69 0.768806
Target:  5'- gCGACGGCGGGGuuuuuuucuCGCGGacGAAGCGUg -3'
miRNA:   3'- -GCUGCCGCUCCuc-------GCGUC--CUUUGCGu -5'
16133 3' -57.6 NC_004065.1 + 133051 0.69 0.777798
Target:  5'- gCGACGGaCGGccGGCGCAGcAGGCGCGg -3'
miRNA:   3'- -GCUGCC-GCUccUCGCGUCcUUUGCGU- -5'
16133 3' -57.6 NC_004065.1 + 18936 0.69 0.777798
Target:  5'- aGACGGCGGGcAGCaGCuauauGGAcGGCGCAu -3'
miRNA:   3'- gCUGCCGCUCcUCG-CGu----CCU-UUGCGU- -5'
16133 3' -57.6 NC_004065.1 + 89252 0.69 0.777798
Target:  5'- uGACGGUGAGGA-----GGAAGCGCAc -3'
miRNA:   3'- gCUGCCGCUCCUcgcguCCUUUGCGU- -5'
16133 3' -57.6 NC_004065.1 + 68652 0.69 0.777798
Target:  5'- aGGCGGcCGAGGcguacGCGCAGucGGCGUAc -3'
miRNA:   3'- gCUGCC-GCUCCu----CGCGUCcuUUGCGU- -5'
16133 3' -57.6 NC_004065.1 + 112562 0.69 0.777798
Target:  5'- uGGCGGCGAGcGGcCGCGgagccGGAcGACGCAg -3'
miRNA:   3'- gCUGCCGCUCcUC-GCGU-----CCU-UUGCGU- -5'
16133 3' -57.6 NC_004065.1 + 115581 0.69 0.777798
Target:  5'- aGACGGCGGuGGugguGGCgGCGGGAGAUGa- -3'
miRNA:   3'- gCUGCCGCU-CC----UCG-CGUCCUUUGCgu -5'
16133 3' -57.6 NC_004065.1 + 105137 0.69 0.785788
Target:  5'- gCGGCGcacauCGAGGAGCGCAacccgggcaccucGGAcguGGCGCGg -3'
miRNA:   3'- -GCUGCc----GCUCCUCGCGU-------------CCU---UUGCGU- -5'
16133 3' -57.6 NC_004065.1 + 65701 0.69 0.786669
Target:  5'- gGGCGuGCGAgcugguGGAcGCGCAGGA--CGCAc -3'
miRNA:   3'- gCUGC-CGCU------CCU-CGCGUCCUuuGCGU- -5'
16133 3' -57.6 NC_004065.1 + 143297 0.69 0.786669
Target:  5'- aGGCGGCGucGGGGGCcgggGCAGGAGGgGa- -3'
miRNA:   3'- gCUGCCGC--UCCUCG----CGUCCUUUgCgu -5'
16133 3' -57.6 NC_004065.1 + 83118 0.69 0.795413
Target:  5'- aGAUGcGCGGGGAGCuGUGGGcGAgGCGu -3'
miRNA:   3'- gCUGC-CGCUCCUCG-CGUCCuUUgCGU- -5'
16133 3' -57.6 NC_004065.1 + 200801 0.69 0.80402
Target:  5'- gCGACGGCGucucGGCGCGGGGAucggACGgGg -3'
miRNA:   3'- -GCUGCCGCucc-UCGCGUCCUU----UGCgU- -5'
16133 3' -57.6 NC_004065.1 + 124979 0.69 0.80402
Target:  5'- gGGCGGCcAGaGGCGCGGGucgugcAGCGCGc -3'
miRNA:   3'- gCUGCCGcUCcUCGCGUCCu-----UUGCGU- -5'
16133 3' -57.6 NC_004065.1 + 58896 0.69 0.80402
Target:  5'- uGACGGUcuggacGAuGAGCGCGGGGGugGgCAg -3'
miRNA:   3'- gCUGCCG------CUcCUCGCGUCCUUugC-GU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.