Results 21 - 40 of 138 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
16133 | 3' | -57.6 | NC_004065.1 | + | 96750 | 0.66 | 0.912271 |
Target: 5'- gCGAgGGCGAGcaGGGCGaCGgcGGAGGCgGCAu -3' miRNA: 3'- -GCUgCCGCUC--CUCGC-GU--CCUUUG-CGU- -5' |
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16133 | 3' | -57.6 | NC_004065.1 | + | 171967 | 0.66 | 0.912271 |
Target: 5'- uGGCGGCGGcGGcGGCGgAGGGGuCGUc -3' miRNA: 3'- gCUGCCGCU-CC-UCGCgUCCUUuGCGu -5' |
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16133 | 3' | -57.6 | NC_004065.1 | + | 28784 | 0.66 | 0.912271 |
Target: 5'- uGACGGUGAcGGAGgagaacagcuCGCGGGuccucugcACGCAc -3' miRNA: 3'- gCUGCCGCU-CCUC----------GCGUCCuu------UGCGU- -5' |
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16133 | 3' | -57.6 | NC_004065.1 | + | 81077 | 0.66 | 0.906456 |
Target: 5'- -aAUGGUuAGGGGCGCcauGGAggUGCAc -3' miRNA: 3'- gcUGCCGcUCCUCGCGu--CCUuuGCGU- -5' |
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16133 | 3' | -57.6 | NC_004065.1 | + | 70968 | 0.66 | 0.906456 |
Target: 5'- aGACGGCGccGGAGCacacgaGGGAAuCGCu -3' miRNA: 3'- gCUGCCGCu-CCUCGcg----UCCUUuGCGu -5' |
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16133 | 3' | -57.6 | NC_004065.1 | + | 120555 | 0.66 | 0.906456 |
Target: 5'- cCGGCGGCGGucggcGcGAGCggGCGGGAccuccGGCGCc -3' miRNA: 3'- -GCUGCCGCU-----C-CUCG--CGUCCU-----UUGCGu -5' |
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16133 | 3' | -57.6 | NC_004065.1 | + | 206527 | 0.66 | 0.906456 |
Target: 5'- aGACGGCGAu-AGCGCGG---ACGCGa -3' miRNA: 3'- gCUGCCGCUccUCGCGUCcuuUGCGU- -5' |
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16133 | 3' | -57.6 | NC_004065.1 | + | 109201 | 0.66 | 0.905863 |
Target: 5'- gCGGCGGCGccucGGccucuuccugcucGGCGaCGGGAGACgGCGg -3' miRNA: 3'- -GCUGCCGCu---CC-------------UCGC-GUCCUUUG-CGU- -5' |
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16133 | 3' | -57.6 | NC_004065.1 | + | 161827 | 0.67 | 0.900424 |
Target: 5'- gGACGGaCGGGcGGGCGgAcGGGGACGgGu -3' miRNA: 3'- gCUGCC-GCUC-CUCGCgU-CCUUUGCgU- -5' |
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16133 | 3' | -57.6 | NC_004065.1 | + | 65066 | 0.67 | 0.900424 |
Target: 5'- gGGCGGCGAGGGGggauCGCGacaGAuacACGCGu -3' miRNA: 3'- gCUGCCGCUCCUC----GCGUc--CUu--UGCGU- -5' |
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16133 | 3' | -57.6 | NC_004065.1 | + | 229657 | 0.67 | 0.900424 |
Target: 5'- cCGGCGGCaguggcaGGuGGGCGuCGGGgcGCGCGu -3' miRNA: 3'- -GCUGCCGc------UC-CUCGC-GUCCuuUGCGU- -5' |
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16133 | 3' | -57.6 | NC_004065.1 | + | 129145 | 0.67 | 0.899809 |
Target: 5'- -cGCGGCGGaggagaacuaccuGGGGCGCAGccuGGACGCc -3' miRNA: 3'- gcUGCCGCU-------------CCUCGCGUCc--UUUGCGu -5' |
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16133 | 3' | -57.6 | NC_004065.1 | + | 196811 | 0.67 | 0.898573 |
Target: 5'- aGGCGGUGGGGGGUcguggucaccugcgGCAGGugcGgGCGa -3' miRNA: 3'- gCUGCCGCUCCUCG--------------CGUCCuu-UgCGU- -5' |
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16133 | 3' | -57.6 | NC_004065.1 | + | 44922 | 0.67 | 0.894178 |
Target: 5'- aGugGGCGGGGgucuGGCagagaugaGCAGGAAAaCGUu -3' miRNA: 3'- gCugCCGCUCC----UCG--------CGUCCUUU-GCGu -5' |
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16133 | 3' | -57.6 | NC_004065.1 | + | 34602 | 0.67 | 0.894178 |
Target: 5'- aCGACGGCGAc--GCgGCGGG-AGCGUAc -3' miRNA: 3'- -GCUGCCGCUccuCG-CGUCCuUUGCGU- -5' |
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16133 | 3' | -57.6 | NC_004065.1 | + | 152671 | 0.67 | 0.894178 |
Target: 5'- aCGGCGGCGAcGGcGCGaGGGAcACGa- -3' miRNA: 3'- -GCUGCCGCU-CCuCGCgUCCUuUGCgu -5' |
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16133 | 3' | -57.6 | NC_004065.1 | + | 128911 | 0.67 | 0.894178 |
Target: 5'- gCGAgGGCGAGGgcuccguuuacGGCGCAcguaagaucaucGGcGGGCGCGa -3' miRNA: 3'- -GCUgCCGCUCC-----------UCGCGU------------CC-UUUGCGU- -5' |
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16133 | 3' | -57.6 | NC_004065.1 | + | 30473 | 0.67 | 0.893542 |
Target: 5'- -cGCGGCacGAuGGGGCGCGcccggcuGGAGGCGCc -3' miRNA: 3'- gcUGCCG--CU-CCUCGCGU-------CCUUUGCGu -5' |
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16133 | 3' | -57.6 | NC_004065.1 | + | 35631 | 0.67 | 0.892263 |
Target: 5'- gCGGCGGCGGGGAugucaucgGCGaCAGGGucccccuguucaucGuCGCGa -3' miRNA: 3'- -GCUGCCGCUCCU--------CGC-GUCCU--------------UuGCGU- -5' |
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16133 | 3' | -57.6 | NC_004065.1 | + | 75783 | 0.67 | 0.88772 |
Target: 5'- aGGCGGCGgucggcgaggGGGAGCGgCGGcGAGGCa-- -3' miRNA: 3'- gCUGCCGC----------UCCUCGC-GUC-CUUUGcgu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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