miRNA display CGI


Results 41 - 60 of 138 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16133 3' -57.6 NC_004065.1 + 75357 0.67 0.88772
Target:  5'- uCGACGGUgcccgaGAGGAGCaGCuGGAggUGa- -3'
miRNA:   3'- -GCUGCCG------CUCCUCG-CGuCCUuuGCgu -5'
16133 3' -57.6 NC_004065.1 + 75783 0.67 0.88772
Target:  5'- aGGCGGCGgucggcgaggGGGAGCGgCGGcGAGGCa-- -3'
miRNA:   3'- gCUGCCGC----------UCCUCGC-GUC-CUUUGcgu -5'
16133 3' -57.6 NC_004065.1 + 144503 0.67 0.885742
Target:  5'- aGACGGCGAcuucGGGCGCggcgaccggaaagaAGGAAgccACGCc -3'
miRNA:   3'- gCUGCCGCUc---CUCGCG--------------UCCUU---UGCGu -5'
16133 3' -57.6 NC_004065.1 + 120345 0.67 0.883746
Target:  5'- uCGGCGGCGAugucgucgGaGAGCGCccGGAGgacccugccggagucGCGCAg -3'
miRNA:   3'- -GCUGCCGCU--------C-CUCGCGu-CCUU---------------UGCGU- -5'
16133 3' -57.6 NC_004065.1 + 105369 0.67 0.879015
Target:  5'- uGACGGCGGacccGGAcucgcugacggccgGCG-AGGAGGCGCu -3'
miRNA:   3'- gCUGCCGCU----CCU--------------CGCgUCCUUUGCGu -5'
16133 3' -57.6 NC_004065.1 + 184872 0.67 0.874185
Target:  5'- gGGCGGCG-GGA-CGCcGGGAACGa- -3'
miRNA:   3'- gCUGCCGCuCCUcGCGuCCUUUGCgu -5'
16133 3' -57.6 NC_004065.1 + 127222 0.67 0.874185
Target:  5'- gCGGCGGCcgcGAGGAucgggcGCGguGGcggggaugauGAGCGCGa -3'
miRNA:   3'- -GCUGCCG---CUCCU------CGCguCC----------UUUGCGU- -5'
16133 3' -57.6 NC_004065.1 + 109842 0.67 0.874185
Target:  5'- -uGCGGCGGGGGgccaucGCGCAGGugccGgGCGg -3'
miRNA:   3'- gcUGCCGCUCCU------CGCGUCCuu--UgCGU- -5'
16133 3' -57.6 NC_004065.1 + 184783 0.67 0.873487
Target:  5'- aGACGacGCGAcGGGCGgAGGAggacgguGACGCAa -3'
miRNA:   3'- gCUGC--CGCUcCUCGCgUCCU-------UUGCGU- -5'
16133 3' -57.6 NC_004065.1 + 146816 0.67 0.872084
Target:  5'- cCGGCGGCGcgcacGGGGGacucgagagcgggcCGCcGGGAGCGCc -3'
miRNA:   3'- -GCUGCCGC-----UCCUC--------------GCGuCCUUUGCGu -5'
16133 3' -57.6 NC_004065.1 + 210143 0.67 0.867115
Target:  5'- uCGGCGGCGAcGGGGUGgauCAGGGucucuaGCAc -3'
miRNA:   3'- -GCUGCCGCU-CCUCGC---GUCCUuug---CGU- -5'
16133 3' -57.6 NC_004065.1 + 121390 0.67 0.867115
Target:  5'- aGAUGcGCGuGGAgucGCGCAGcuGGCGCAg -3'
miRNA:   3'- gCUGC-CGCuCCU---CGCGUCcuUUGCGU- -5'
16133 3' -57.6 NC_004065.1 + 81996 0.67 0.867115
Target:  5'- uCGGCGGCGGGGAagGCGCccGugcCGCu -3'
miRNA:   3'- -GCUGCCGCUCCU--CGCGucCuuuGCGu -5'
16133 3' -57.6 NC_004065.1 + 227887 0.67 0.867115
Target:  5'- aCGGCGGaCGAGGAuCGCuccgAGGAuAGCGUu -3'
miRNA:   3'- -GCUGCC-GCUCCUcGCG----UCCU-UUGCGu -5'
16133 3' -57.6 NC_004065.1 + 195443 0.67 0.867115
Target:  5'- -aACGGCGucgcGGAGCGCAcGGucuGCGUc -3'
miRNA:   3'- gcUGCCGCu---CCUCGCGU-CCuu-UGCGu -5'
16133 3' -57.6 NC_004065.1 + 126269 0.67 0.866397
Target:  5'- gCGACGGUccgGAGGccccgccGCGCgaaccgacgccgaAGGAGGCGCGu -3'
miRNA:   3'- -GCUGCCG---CUCCu------CGCG-------------UCCUUUGCGU- -5'
16133 3' -57.6 NC_004065.1 + 114888 0.67 0.866397
Target:  5'- uGGCGGUGAccucucccuacccGGAGaGCGGGGAuaucccaaGCGCAc -3'
miRNA:   3'- gCUGCCGCU-------------CCUCgCGUCCUU--------UGCGU- -5'
16133 3' -57.6 NC_004065.1 + 163643 0.68 0.85985
Target:  5'- gCGGCGGCGGcGGcAGCGgCAGcGGAgGCAc -3'
miRNA:   3'- -GCUGCCGCU-CC-UCGC-GUCcUUUgCGU- -5'
16133 3' -57.6 NC_004065.1 + 50948 0.68 0.85985
Target:  5'- gGGCGGCGAGGAGaugaGGGucACGg- -3'
miRNA:   3'- gCUGCCGCUCCUCgcg-UCCuuUGCgu -5'
16133 3' -57.6 NC_004065.1 + 59128 0.68 0.85985
Target:  5'- cCGAcCGaGCGAGcGAGCGCgAGGcGACGaCGg -3'
miRNA:   3'- -GCU-GC-CGCUC-CUCGCG-UCCuUUGC-GU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.