miRNA display CGI


Results 61 - 80 of 138 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16133 3' -57.6 NC_004065.1 + 50948 0.68 0.85985
Target:  5'- gGGCGGCGAGGAGaugaGGGucACGg- -3'
miRNA:   3'- gCUGCCGCUCCUCgcg-UCCuuUGCgu -5'
16133 3' -57.6 NC_004065.1 + 151540 0.68 0.852395
Target:  5'- gGGCGGUGucGGGCGCGcuuGACGCGg -3'
miRNA:   3'- gCUGCCGCucCUCGCGUccuUUGCGU- -5'
16133 3' -57.6 NC_004065.1 + 38960 0.68 0.852395
Target:  5'- gCGAcCGGCGcGGGGGUucuGguGGAagguGACGCAg -3'
miRNA:   3'- -GCU-GCCGC-UCCUCG---CguCCU----UUGCGU- -5'
16133 3' -57.6 NC_004065.1 + 136632 0.68 0.844756
Target:  5'- aGGCGGCGGuccGGAGCGgCGuGGAuccugGugGCGa -3'
miRNA:   3'- gCUGCCGCU---CCUCGC-GU-CCU-----UugCGU- -5'
16133 3' -57.6 NC_004065.1 + 42586 0.68 0.844756
Target:  5'- aGuCGGCGccgcaugcuucAGGAGCGCgcuGGGguGCGCu -3'
miRNA:   3'- gCuGCCGC-----------UCCUCGCG---UCCuuUGCGu -5'
16133 3' -57.6 NC_004065.1 + 128420 0.68 0.842429
Target:  5'- gCGGCGGCGGcGccgccaccgagucuGAGCGCGgcGGAGGCGUc -3'
miRNA:   3'- -GCUGCCGCU-C--------------CUCGCGU--CCUUUGCGu -5'
16133 3' -57.6 NC_004065.1 + 1218 0.68 0.836939
Target:  5'- aGAacGCGAcGGAGCGCAGGA--CGCc -3'
miRNA:   3'- gCUgcCGCU-CCUCGCGUCCUuuGCGu -5'
16133 3' -57.6 NC_004065.1 + 102106 0.68 0.836939
Target:  5'- gCGAUGGCcggaccGAGGuGCGCGgucauGGAGuugGCGCAg -3'
miRNA:   3'- -GCUGCCG------CUCCuCGCGU-----CCUU---UGCGU- -5'
16133 3' -57.6 NC_004065.1 + 67561 0.68 0.832166
Target:  5'- cCGGcCGcGCGAGGccuucgccgaAGCGCAGGGgccucggcucgagauAGCGCGg -3'
miRNA:   3'- -GCU-GC-CGCUCC----------UCGCGUCCU---------------UUGCGU- -5'
16133 3' -57.6 NC_004065.1 + 88454 0.68 0.82895
Target:  5'- ---gGGCGAGGGcGuCGCAGGucuuGCGCGc -3'
miRNA:   3'- gcugCCGCUCCU-C-GCGUCCuu--UGCGU- -5'
16133 3' -57.6 NC_004065.1 + 24805 0.68 0.82895
Target:  5'- cCGAUGcagaGCGAGagcccuuucGGGUGguGGAGACGCAc -3'
miRNA:   3'- -GCUGC----CGCUC---------CUCGCguCCUUUGCGU- -5'
16133 3' -57.6 NC_004065.1 + 133592 0.68 0.82895
Target:  5'- aGGCGcuCGAGGAGCGUuGcGAGCGCGa -3'
miRNA:   3'- gCUGCc-GCUCCUCGCGuCcUUUGCGU- -5'
16133 3' -57.6 NC_004065.1 + 25686 0.68 0.82895
Target:  5'- aGGCGGCGAGGuaguagauGGCGUcguccgGGGGccCGCGa -3'
miRNA:   3'- gCUGCCGCUCC--------UCGCG------UCCUuuGCGU- -5'
16133 3' -57.6 NC_004065.1 + 67381 0.68 0.826521
Target:  5'- uGACGGUcggcgugcacacgaGAGGggugaucguGGCGCGGGggGCGa- -3'
miRNA:   3'- gCUGCCG--------------CUCC---------UCGCGUCCuuUGCgu -5'
16133 3' -57.6 NC_004065.1 + 52483 0.68 0.820796
Target:  5'- uGGCGGUGGGGuguugGGCGCuGuuGGCGCGc -3'
miRNA:   3'- gCUGCCGCUCC-----UCGCGuCcuUUGCGU- -5'
16133 3' -57.6 NC_004065.1 + 23607 0.69 0.812483
Target:  5'- aGGCGGUGAGGcGgGCAGGcggguGGACGg- -3'
miRNA:   3'- gCUGCCGCUCCuCgCGUCC-----UUUGCgu -5'
16133 3' -57.6 NC_004065.1 + 200801 0.69 0.80402
Target:  5'- gCGACGGCGucucGGCGCGGGGAucggACGgGg -3'
miRNA:   3'- -GCUGCCGCucc-UCGCGUCCUU----UGCgU- -5'
16133 3' -57.6 NC_004065.1 + 124979 0.69 0.80402
Target:  5'- gGGCGGCcAGaGGCGCGGGucgugcAGCGCGc -3'
miRNA:   3'- gCUGCCGcUCcUCGCGUCCu-----UUGCGU- -5'
16133 3' -57.6 NC_004065.1 + 162442 0.69 0.80402
Target:  5'- cCGACGGCGAGaucAGCGUcgugcGGcAGCGCGu -3'
miRNA:   3'- -GCUGCCGCUCc--UCGCGu----CCuUUGCGU- -5'
16133 3' -57.6 NC_004065.1 + 104904 0.69 0.80402
Target:  5'- gCGACGGCGcGGuGGUGCcGGcgGCGUAc -3'
miRNA:   3'- -GCUGCCGCuCC-UCGCGuCCuuUGCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.