miRNA display CGI


Results 1 - 20 of 138 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16133 3' -57.6 NC_004065.1 + 1218 0.68 0.836939
Target:  5'- aGAacGCGAcGGAGCGCAGGA--CGCc -3'
miRNA:   3'- gCUgcCGCU-CCUCGCGUCCUuuGCGu -5'
16133 3' -57.6 NC_004065.1 + 4383 0.66 0.912271
Target:  5'- gCGGCGGCGGgagccGGAGUGCuguucGGAgcgGugGCc -3'
miRNA:   3'- -GCUGCCGCU-----CCUCGCGu----CCU---UugCGu -5'
16133 3' -57.6 NC_004065.1 + 18936 0.69 0.777798
Target:  5'- aGACGGCGGGcAGCaGCuauauGGAcGGCGCAu -3'
miRNA:   3'- gCUGCCGCUCcUCG-CGu----CCU-UUGCGU- -5'
16133 3' -57.6 NC_004065.1 + 19756 0.66 0.912271
Target:  5'- aCGGgGGCGugcGGGGGUGUGGGcGACGgAg -3'
miRNA:   3'- -GCUgCCGC---UCCUCGCGUCCuUUGCgU- -5'
16133 3' -57.6 NC_004065.1 + 21979 0.66 0.9284
Target:  5'- gGACGGUGAGGGcCGCcacGGccACGCc -3'
miRNA:   3'- gCUGCCGCUCCUcGCGu--CCuuUGCGu -5'
16133 3' -57.6 NC_004065.1 + 22165 0.75 0.46706
Target:  5'- uGACGGUGAGGGGCGguGGGuugAgaucggucucucugaACGCGu -3'
miRNA:   3'- gCUGCCGCUCCUCGCguCCU---U---------------UGCGU- -5'
16133 3' -57.6 NC_004065.1 + 23607 0.69 0.812483
Target:  5'- aGGCGGUGAGGcGgGCAGGcggguGGACGg- -3'
miRNA:   3'- gCUGCCGCUCCuCgCGUCC-----UUUGCgu -5'
16133 3' -57.6 NC_004065.1 + 24805 0.68 0.82895
Target:  5'- cCGAUGcagaGCGAGagcccuuucGGGUGguGGAGACGCAc -3'
miRNA:   3'- -GCUGC----CGCUC---------CUCGCguCCUUUGCGU- -5'
16133 3' -57.6 NC_004065.1 + 25686 0.68 0.82895
Target:  5'- aGGCGGCGAGGuaguagauGGCGUcguccgGGGGccCGCGa -3'
miRNA:   3'- gCUGCCGCUCC--------UCGCG------UCCUuuGCGU- -5'
16133 3' -57.6 NC_004065.1 + 27144 0.66 0.912271
Target:  5'- gGGCuacGCGAGaGGCGCGGGGAACuCGg -3'
miRNA:   3'- gCUGc--CGCUCcUCGCGUCCUUUGcGU- -5'
16133 3' -57.6 NC_004065.1 + 28784 0.66 0.912271
Target:  5'- uGACGGUGAcGGAGgagaacagcuCGCGGGuccucugcACGCAc -3'
miRNA:   3'- gCUGCCGCU-CCUC----------GCGUCCuu------UGCGU- -5'
16133 3' -57.6 NC_004065.1 + 30122 0.74 0.518552
Target:  5'- cCGGCGGCcuGGGGAGgGCGGGugGCGgAg -3'
miRNA:   3'- -GCUGCCG--CUCCUCgCGUCCuuUGCgU- -5'
16133 3' -57.6 NC_004065.1 + 30473 0.67 0.893542
Target:  5'- -cGCGGCacGAuGGGGCGCGcccggcuGGAGGCGCc -3'
miRNA:   3'- gcUGCCG--CU-CCUCGCGU-------CCUUUGCGu -5'
16133 3' -57.6 NC_004065.1 + 30873 0.71 0.71278
Target:  5'- uCGACGGCGGGuucGAGCGCccgcagggcgucGGGGu-CGCAc -3'
miRNA:   3'- -GCUGCCGCUC---CUCGCG------------UCCUuuGCGU- -5'
16133 3' -57.6 NC_004065.1 + 33666 0.72 0.654467
Target:  5'- cCGGCGcGCGGGGAGgGCcgcuGcGAGAUGCGa -3'
miRNA:   3'- -GCUGC-CGCUCCUCgCGu---C-CUUUGCGU- -5'
16133 3' -57.6 NC_004065.1 + 34602 0.67 0.894178
Target:  5'- aCGACGGCGAc--GCgGCGGG-AGCGUAc -3'
miRNA:   3'- -GCUGCCGCUccuCG-CGUCCuUUGCGU- -5'
16133 3' -57.6 NC_004065.1 + 35631 0.67 0.892263
Target:  5'- gCGGCGGCGGGGAugucaucgGCGaCAGGGucccccuguucaucGuCGCGa -3'
miRNA:   3'- -GCUGCCGCUCCU--------CGC-GUCCU--------------UuGCGU- -5'
16133 3' -57.6 NC_004065.1 + 37420 0.7 0.722324
Target:  5'- cCGACGGCGcguucacgcuGGAGCGCGuGGAaGACGg- -3'
miRNA:   3'- -GCUGCCGCu---------CCUCGCGU-CCU-UUGCgu -5'
16133 3' -57.6 NC_004065.1 + 38960 0.68 0.852395
Target:  5'- gCGAcCGGCGcGGGGGUucuGguGGAagguGACGCAg -3'
miRNA:   3'- -GCU-GCCGC-UCCUCG---CguCCU----UUGCGU- -5'
16133 3' -57.6 NC_004065.1 + 41484 0.66 0.923244
Target:  5'- -aGCGuGCGccGGGGCGUcgggacGGGGAGCGCGc -3'
miRNA:   3'- gcUGC-CGCu-CCUCGCG------UCCUUUGCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.