miRNA display CGI


Results 21 - 40 of 138 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16133 3' -57.6 NC_004065.1 + 42234 0.74 0.499882
Target:  5'- gGAuCGGCGGGGGGCGCgauAGGGggUGUc -3'
miRNA:   3'- gCU-GCCGCUCCUCGCG---UCCUuuGCGu -5'
16133 3' -57.6 NC_004065.1 + 42586 0.68 0.844756
Target:  5'- aGuCGGCGccgcaugcuucAGGAGCGCgcuGGGguGCGCu -3'
miRNA:   3'- gCuGCCGC-----------UCCUCGCG---UCCuuUGCGu -5'
16133 3' -57.6 NC_004065.1 + 44519 0.66 0.923244
Target:  5'- cCGGCGGCGcgauguuaccGGGGaCGguGGcgGCGCu -3'
miRNA:   3'- -GCUGCCGCu---------CCUC-GCguCCuuUGCGu -5'
16133 3' -57.6 NC_004065.1 + 44922 0.67 0.894178
Target:  5'- aGugGGCGGGGgucuGGCagagaugaGCAGGAAAaCGUu -3'
miRNA:   3'- gCugCCGCUCC----UCG--------CGUCCUUU-GCGu -5'
16133 3' -57.6 NC_004065.1 + 46710 0.7 0.740253
Target:  5'- aGACGaaaucccuguuccGCGAGGucGCGCAcGAGGCGCAc -3'
miRNA:   3'- gCUGC-------------CGCUCCu-CGCGUcCUUUGCGU- -5'
16133 3' -57.6 NC_004065.1 + 46887 0.72 0.615157
Target:  5'- uGACGGCGAGGAuGCacgGCuggAGGggGcCGCGa -3'
miRNA:   3'- gCUGCCGCUCCU-CG---CG---UCCuuU-GCGU- -5'
16133 3' -57.6 NC_004065.1 + 48106 0.74 0.509181
Target:  5'- gCGGCGGCGGuGGcggcGGCGguGGGAccucGCGCAc -3'
miRNA:   3'- -GCUGCCGCU-CC----UCGCguCCUU----UGCGU- -5'
16133 3' -57.6 NC_004065.1 + 50948 0.68 0.85985
Target:  5'- gGGCGGCGAGGAGaugaGGGucACGg- -3'
miRNA:   3'- gCUGCCGCUCCUCgcg-UCCuuUGCgu -5'
16133 3' -57.6 NC_004065.1 + 52483 0.68 0.820796
Target:  5'- uGGCGGUGGGGuguugGGCGCuGuuGGCGCGc -3'
miRNA:   3'- gCUGCCGCUCC-----UCGCGuCcuUUGCGU- -5'
16133 3' -57.6 NC_004065.1 + 53905 0.73 0.595546
Target:  5'- aGACGacGCGAGGAGCGCccgucAGGAuacCGCu -3'
miRNA:   3'- gCUGC--CGCUCCUCGCG-----UCCUuu-GCGu -5'
16133 3' -57.6 NC_004065.1 + 58896 0.69 0.80402
Target:  5'- uGACGGUcuggacGAuGAGCGCGGGGGugGgCAg -3'
miRNA:   3'- gCUGCCG------CUcCUCGCGUCCUUugC-GU- -5'
16133 3' -57.6 NC_004065.1 + 59128 0.68 0.85985
Target:  5'- cCGAcCGaGCGAGcGAGCGCgAGGcGACGaCGg -3'
miRNA:   3'- -GCU-GC-CGCUC-CUCGCG-UCCuUUGC-GU- -5'
16133 3' -57.6 NC_004065.1 + 61666 0.71 0.674053
Target:  5'- aCGAUGGCGGuguaGAGCGCgAGGGGucCGCAg -3'
miRNA:   3'- -GCUGCCGCUc---CUCGCG-UCCUUu-GCGU- -5'
16133 3' -57.6 NC_004065.1 + 62376 0.78 0.305688
Target:  5'- uGGCGGCGGGGgugguGGCgGCGGGGGugGCGg -3'
miRNA:   3'- gCUGCCGCUCC-----UCG-CGUCCUUugCGU- -5'
16133 3' -57.6 NC_004065.1 + 65066 0.67 0.900424
Target:  5'- gGGCGGCGAGGGGggauCGCGacaGAuacACGCGu -3'
miRNA:   3'- gCUGCCGCUCCUC----GCGUc--CUu--UGCGU- -5'
16133 3' -57.6 NC_004065.1 + 65701 0.69 0.786669
Target:  5'- gGGCGuGCGAgcugguGGAcGCGCAGGA--CGCAc -3'
miRNA:   3'- gCUGC-CGCU------CCU-CGCGUCCUuuGCGU- -5'
16133 3' -57.6 NC_004065.1 + 67381 0.68 0.826521
Target:  5'- uGACGGUcggcgugcacacgaGAGGggugaucguGGCGCGGGggGCGa- -3'
miRNA:   3'- gCUGCCG--------------CUCC---------UCGCGUCCuuUGCgu -5'
16133 3' -57.6 NC_004065.1 + 67561 0.68 0.832166
Target:  5'- cCGGcCGcGCGAGGccuucgccgaAGCGCAGGGgccucggcucgagauAGCGCGg -3'
miRNA:   3'- -GCU-GC-CGCUCC----------UCGCGUCCU---------------UUGCGU- -5'
16133 3' -57.6 NC_004065.1 + 68652 0.69 0.777798
Target:  5'- aGGCGGcCGAGGcguacGCGCAGucGGCGUAc -3'
miRNA:   3'- gCUGCC-GCUCCu----CGCGUCcuUUGCGU- -5'
16133 3' -57.6 NC_004065.1 + 68891 0.66 0.917867
Target:  5'- aGACGGcCGAGGugaAGCuGgAGGuGACGCc -3'
miRNA:   3'- gCUGCC-GCUCC---UCG-CgUCCuUUGCGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.