miRNA display CGI


Results 41 - 60 of 138 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16133 3' -57.6 NC_004065.1 + 69308 0.66 0.912271
Target:  5'- aGGCGGUGAcGGGCauGCuGGAGaACGCGc -3'
miRNA:   3'- gCUGCCGCUcCUCG--CGuCCUU-UGCGU- -5'
16133 3' -57.6 NC_004065.1 + 70344 0.83 0.162466
Target:  5'- aCGGCGGCGAGGAGCGCcucGGguAUGCu -3'
miRNA:   3'- -GCUGCCGCUCCUCGCGu--CCuuUGCGu -5'
16133 3' -57.6 NC_004065.1 + 70506 0.7 0.730852
Target:  5'- gCGAUGGCGGcgcccuucucgacGGAGCuGCAGGcgcgccugcAGGCGCGa -3'
miRNA:   3'- -GCUGCCGCU-------------CCUCG-CGUCC---------UUUGCGU- -5'
16133 3' -57.6 NC_004065.1 + 70968 0.66 0.906456
Target:  5'- aGACGGCGccGGAGCacacgaGGGAAuCGCu -3'
miRNA:   3'- gCUGCCGCu-CCUCGcg----UCCUUuGCGu -5'
16133 3' -57.6 NC_004065.1 + 74701 0.66 0.923244
Target:  5'- cCGAUGGggaUGAGGaAGCGCGGGcgccuGCGaCAg -3'
miRNA:   3'- -GCUGCC---GCUCC-UCGCGUCCuu---UGC-GU- -5'
16133 3' -57.6 NC_004065.1 + 74837 0.71 0.71278
Target:  5'- gGuCGGgacCGAGGGGCGCAGGuuGAgGCGg -3'
miRNA:   3'- gCuGCC---GCUCCUCGCGUCCu-UUgCGU- -5'
16133 3' -57.6 NC_004065.1 + 75357 0.67 0.88772
Target:  5'- uCGACGGUgcccgaGAGGAGCaGCuGGAggUGa- -3'
miRNA:   3'- -GCUGCCG------CUCCUCG-CGuCCUuuGCgu -5'
16133 3' -57.6 NC_004065.1 + 75490 0.78 0.312516
Target:  5'- gCGGCGGCGAGGAucaggGCGCAGuGAAuaGCGUu -3'
miRNA:   3'- -GCUGCCGCUCCU-----CGCGUC-CUU--UGCGu -5'
16133 3' -57.6 NC_004065.1 + 75783 0.67 0.88772
Target:  5'- aGGCGGCGgucggcgaggGGGAGCGgCGGcGAGGCa-- -3'
miRNA:   3'- gCUGCCGC----------UCCUCGC-GUC-CUUUGcgu -5'
16133 3' -57.6 NC_004065.1 + 79326 0.66 0.923244
Target:  5'- cCGGCGGCGGuucGuGCGCGcGGAGgacgagggcgGCGCGg -3'
miRNA:   3'- -GCUGCCGCUc--CuCGCGU-CCUU----------UGCGU- -5'
16133 3' -57.6 NC_004065.1 + 80799 0.7 0.722324
Target:  5'- gCGGCGGCGGcGGcGGCaGCGGGAgcAGCGaCAg -3'
miRNA:   3'- -GCUGCCGCU-CC-UCG-CGUCCU--UUGC-GU- -5'
16133 3' -57.6 NC_004065.1 + 81077 0.66 0.906456
Target:  5'- -aAUGGUuAGGGGCGCcauGGAggUGCAc -3'
miRNA:   3'- gcUGCCGcUCCUCGCGu--CCUuuGCGU- -5'
16133 3' -57.6 NC_004065.1 + 81996 0.67 0.867115
Target:  5'- uCGGCGGCGGGGAagGCGCccGugcCGCu -3'
miRNA:   3'- -GCUGCCGCUCCU--CGCGucCuuuGCGu -5'
16133 3' -57.6 NC_004065.1 + 83118 0.69 0.795413
Target:  5'- aGAUGcGCGGGGAGCuGUGGGcGAgGCGu -3'
miRNA:   3'- gCUGC-CGCUCCUCG-CGUCCuUUgCGU- -5'
16133 3' -57.6 NC_004065.1 + 83582 0.77 0.387085
Target:  5'- gCGACGGCGGGGaAGC-CGGGGAagaagacggaGCGCGg -3'
miRNA:   3'- -GCUGCCGCUCC-UCGcGUCCUU----------UGCGU- -5'
16133 3' -57.6 NC_004065.1 + 88454 0.68 0.82895
Target:  5'- ---gGGCGAGGGcGuCGCAGGucuuGCGCGc -3'
miRNA:   3'- gcugCCGCUCCU-C-GCGUCCuu--UGCGU- -5'
16133 3' -57.6 NC_004065.1 + 89252 0.69 0.777798
Target:  5'- uGACGGUGAGGA-----GGAAGCGCAc -3'
miRNA:   3'- gCUGCCGCUCCUcgcguCCUUUGCGU- -5'
16133 3' -57.6 NC_004065.1 + 90050 0.69 0.768806
Target:  5'- gCGACGGCGGGGuuuuuuucuCGCGGacGAAGCGUg -3'
miRNA:   3'- -GCUGCCGCUCCuc-------GCGUC--CUUUGCGu -5'
16133 3' -57.6 NC_004065.1 + 91755 0.74 0.499882
Target:  5'- aGACGGCG-GGAGCGaCGGGGgcGAgGCu -3'
miRNA:   3'- gCUGCCGCuCCUCGC-GUCCU--UUgCGu -5'
16133 3' -57.6 NC_004065.1 + 91794 0.75 0.44319
Target:  5'- aCGGCGGCGAGcgccucgacauccaGAGCGCGGucGAGACGUc -3'
miRNA:   3'- -GCUGCCGCUC--------------CUCGCGUC--CUUUGCGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.