miRNA display CGI


Results 1 - 20 of 138 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16133 3' -57.6 NC_004065.1 + 229657 0.67 0.900424
Target:  5'- cCGGCGGCaguggcaGGuGGGCGuCGGGgcGCGCGu -3'
miRNA:   3'- -GCUGCCGc------UC-CUCGC-GUCCuuUGCGU- -5'
16133 3' -57.6 NC_004065.1 + 229473 0.66 0.9284
Target:  5'- cCGuuGcGCGAacagGGGGCGCucgcacAGGggGCGCGc -3'
miRNA:   3'- -GCugC-CGCU----CCUCGCG------UCCuuUGCGU- -5'
16133 3' -57.6 NC_004065.1 + 228993 0.78 0.325806
Target:  5'- aCGaACGGCGAgGGAGCGCGcGGAGcgagaucGCGCAc -3'
miRNA:   3'- -GC-UGCCGCU-CCUCGCGU-CCUU-------UGCGU- -5'
16133 3' -57.6 NC_004065.1 + 228317 0.71 0.664272
Target:  5'- gGACGGCGGGugcuuuGGGCGguGG-GACGUAc -3'
miRNA:   3'- gCUGCCGCUC------CUCGCguCCuUUGCGU- -5'
16133 3' -57.6 NC_004065.1 + 227887 0.67 0.867115
Target:  5'- aCGGCGGaCGAGGAuCGCuccgAGGAuAGCGUu -3'
miRNA:   3'- -GCUGCC-GCUCCUcGCG----UCCU-UUGCGu -5'
16133 3' -57.6 NC_004065.1 + 225384 0.66 0.923244
Target:  5'- -cGCGGCG-GGGGCGCuGGcgcuGAugGUg -3'
miRNA:   3'- gcUGCCGCuCCUCGCGuCC----UUugCGu -5'
16133 3' -57.6 NC_004065.1 + 211389 0.76 0.427663
Target:  5'- aGACGGCaGAGGuggcggaGGCGgGGGAAACGUg -3'
miRNA:   3'- gCUGCCG-CUCC-------UCGCgUCCUUUGCGu -5'
16133 3' -57.6 NC_004065.1 + 211149 0.66 0.927895
Target:  5'- cCGuuCGGgGGGGAGCGggcgugcCGGGAuguCGCAc -3'
miRNA:   3'- -GCu-GCCgCUCCUCGC-------GUCCUuu-GCGU- -5'
16133 3' -57.6 NC_004065.1 + 210143 0.67 0.867115
Target:  5'- uCGGCGGCGAcGGGGUGgauCAGGGucucuaGCAc -3'
miRNA:   3'- -GCUGCCGCU-CCUCGC---GUCCUuug---CGU- -5'
16133 3' -57.6 NC_004065.1 + 206527 0.66 0.906456
Target:  5'- aGACGGCGAu-AGCGCGG---ACGCGa -3'
miRNA:   3'- gCUGCCGCUccUCGCGUCcuuUGCGU- -5'
16133 3' -57.6 NC_004065.1 + 205444 0.66 0.923244
Target:  5'- uGGCGGCGAcGAcacGCGCGGaccGCGCGa -3'
miRNA:   3'- gCUGCCGCUcCU---CGCGUCcuuUGCGU- -5'
16133 3' -57.6 NC_004065.1 + 200944 0.71 0.71278
Target:  5'- --cCGcCucGGAGCGCAGGGAGCGCGg -3'
miRNA:   3'- gcuGCcGcuCCUCGCGUCCUUUGCGU- -5'
16133 3' -57.6 NC_004065.1 + 200852 0.7 0.731796
Target:  5'- gGAguuCGGCGucgacGGGGGCGCGGGcGGugGCGa -3'
miRNA:   3'- gCU---GCCGC-----UCCUCGCGUCC-UUugCGU- -5'
16133 3' -57.6 NC_004065.1 + 200801 0.69 0.80402
Target:  5'- gCGACGGCGucucGGCGCGGGGAucggACGgGg -3'
miRNA:   3'- -GCUGCCGCucc-UCGCGUCCUU----UGCgU- -5'
16133 3' -57.6 NC_004065.1 + 196811 0.67 0.898573
Target:  5'- aGGCGGUGGGGGGUcguggucaccugcgGCAGGugcGgGCGa -3'
miRNA:   3'- gCUGCCGCUCCUCG--------------CGUCCuu-UgCGU- -5'
16133 3' -57.6 NC_004065.1 + 195443 0.67 0.867115
Target:  5'- -aACGGCGucgcGGAGCGCAcGGucuGCGUc -3'
miRNA:   3'- gcUGCCGCu---CCUCGCGU-CCuu-UGCGu -5'
16133 3' -57.6 NC_004065.1 + 184872 0.67 0.874185
Target:  5'- gGGCGGCG-GGA-CGCcGGGAACGa- -3'
miRNA:   3'- gCUGCCGCuCCUcGCGuCCUUUGCgu -5'
16133 3' -57.6 NC_004065.1 + 184783 0.67 0.873487
Target:  5'- aGACGacGCGAcGGGCGgAGGAggacgguGACGCAa -3'
miRNA:   3'- gCUGC--CGCUcCUCGCgUCCU-------UUGCGU- -5'
16133 3' -57.6 NC_004065.1 + 182505 0.66 0.917867
Target:  5'- gGGCGGUGgucccaauAGGGGCGguGGucccaaucaaGAugGCGg -3'
miRNA:   3'- gCUGCCGC--------UCCUCGCguCC----------UUugCGU- -5'
16133 3' -57.6 NC_004065.1 + 181131 0.75 0.454598
Target:  5'- gCGGCGGCGGGGAGagaaaaCGUAGGGuaacaaccGCGCAc -3'
miRNA:   3'- -GCUGCCGCUCCUC------GCGUCCUu-------UGCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.