miRNA display CGI


Results 21 - 40 of 138 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16133 3' -57.6 NC_004065.1 + 172087 0.71 0.703173
Target:  5'- uGugGGUgGAGGGGC-CGGGGGAgGCGg -3'
miRNA:   3'- gCugCCG-CUCCUCGcGUCCUUUgCGU- -5'
16133 3' -57.6 NC_004065.1 + 171967 0.66 0.912271
Target:  5'- uGGCGGCGGcGGcGGCGgAGGGGuCGUc -3'
miRNA:   3'- gCUGCCGCU-CC-UCGCgUCCUUuGCGu -5'
16133 3' -57.6 NC_004065.1 + 163643 0.68 0.85985
Target:  5'- gCGGCGGCGGcGGcAGCGgCAGcGGAgGCAc -3'
miRNA:   3'- -GCUGCCGCU-CC-UCGC-GUCcUUUgCGU- -5'
16133 3' -57.6 NC_004065.1 + 162442 0.69 0.80402
Target:  5'- cCGACGGCGAGaucAGCGUcgugcGGcAGCGCGu -3'
miRNA:   3'- -GCUGCCGCUCc--UCGCGu----CCuUUGCGU- -5'
16133 3' -57.6 NC_004065.1 + 161827 0.67 0.900424
Target:  5'- gGACGGaCGGGcGGGCGgAcGGGGACGgGu -3'
miRNA:   3'- gCUGCC-GCUC-CUCGCgU-CCUUUGCgU- -5'
16133 3' -57.6 NC_004065.1 + 157182 0.66 0.917867
Target:  5'- aCGGCGuucuguccuguuGUGGGGGGUuagucaGCAGGugGCGCAa -3'
miRNA:   3'- -GCUGC------------CGCUCCUCG------CGUCCuuUGCGU- -5'
16133 3' -57.6 NC_004065.1 + 156323 0.7 0.731796
Target:  5'- gCGGCGGCgGAGGAG-G-AGGAAGCgGCGg -3'
miRNA:   3'- -GCUGCCG-CUCCUCgCgUCCUUUG-CGU- -5'
16133 3' -57.6 NC_004065.1 + 152671 0.67 0.894178
Target:  5'- aCGGCGGCGAcGGcGCGaGGGAcACGa- -3'
miRNA:   3'- -GCUGCCGCU-CCuCGCgUCCUuUGCgu -5'
16133 3' -57.6 NC_004065.1 + 151540 0.68 0.852395
Target:  5'- gGGCGGUGucGGGCGCGcuuGACGCGg -3'
miRNA:   3'- gCUGCCGCucCUCGCGUccuUUGCGU- -5'
16133 3' -57.6 NC_004065.1 + 148873 0.83 0.174771
Target:  5'- gCGGCGGCGGGGGGCGaGGGGGACGa- -3'
miRNA:   3'- -GCUGCCGCUCCUCGCgUCCUUUGCgu -5'
16133 3' -57.6 NC_004065.1 + 146816 0.67 0.872084
Target:  5'- cCGGCGGCGcgcacGGGGGacucgagagcgggcCGCcGGGAGCGCc -3'
miRNA:   3'- -GCUGCCGC-----UCCUC--------------GCGuCCUUUGCGu -5'
16133 3' -57.6 NC_004065.1 + 144503 0.67 0.885742
Target:  5'- aGACGGCGAcuucGGGCGCggcgaccggaaagaAGGAAgccACGCc -3'
miRNA:   3'- gCUGCCGCUc---CUCGCG--------------UCCUU---UGCGu -5'
16133 3' -57.6 NC_004065.1 + 143366 0.68 0.85985
Target:  5'- gGGgGGaCGAGG-GCGCGGGAacaacAACgGCAa -3'
miRNA:   3'- gCUgCC-GCUCCuCGCGUCCU-----UUG-CGU- -5'
16133 3' -57.6 NC_004065.1 + 143297 0.69 0.786669
Target:  5'- aGGCGGCGucGGGGGCcgggGCAGGAGGgGa- -3'
miRNA:   3'- gCUGCCGC--UCCUCG----CGUCCUUUgCgu -5'
16133 3' -57.6 NC_004065.1 + 143064 0.74 0.518552
Target:  5'- ---gGGCGAGGGGCGCuucGGggGCGaCGa -3'
miRNA:   3'- gcugCCGCUCCUCGCGu--CCuuUGC-GU- -5'
16133 3' -57.6 NC_004065.1 + 139857 0.7 0.749566
Target:  5'- gCGACGGCGGaggcggcGGAGCcggcgGCAGGAcgGACGa- -3'
miRNA:   3'- -GCUGCCGCU-------CCUCG-----CGUCCU--UUGCgu -5'
16133 3' -57.6 NC_004065.1 + 139320 1.09 0.00348
Target:  5'- aCGACGGCGAGGAGCGCAGGAAACGCAu -3'
miRNA:   3'- -GCUGCCGCUCCUCGCGUCCUUUGCGU- -5'
16133 3' -57.6 NC_004065.1 + 137409 0.66 0.923244
Target:  5'- gGugGGCGuaccuaguuuaGGGGGCGUgguuccggGGGuuGCGCu -3'
miRNA:   3'- gCugCCGC-----------UCCUCGCG--------UCCuuUGCGu -5'
16133 3' -57.6 NC_004065.1 + 136768 0.75 0.481515
Target:  5'- -uGCGGgGGGaGAGCGUGGGGGAUGCGg -3'
miRNA:   3'- gcUGCCgCUC-CUCGCGUCCUUUGCGU- -5'
16133 3' -57.6 NC_004065.1 + 136632 0.68 0.844756
Target:  5'- aGGCGGCGGuccGGAGCGgCGuGGAuccugGugGCGa -3'
miRNA:   3'- gCUGCCGCU---CCUCGC-GU-CCU-----UugCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.