miRNA display CGI


Results 1 - 20 of 138 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16133 3' -57.6 NC_004065.1 + 68652 0.69 0.777798
Target:  5'- aGGCGGcCGAGGcguacGCGCAGucGGCGUAc -3'
miRNA:   3'- gCUGCC-GCUCCu----CGCGUCcuUUGCGU- -5'
16133 3' -57.6 NC_004065.1 + 98674 0.71 0.71278
Target:  5'- uGACGGgGGGGAcgcccGCGC-GGAAAUGUg -3'
miRNA:   3'- gCUGCCgCUCCU-----CGCGuCCUUUGCGu -5'
16133 3' -57.6 NC_004065.1 + 74837 0.71 0.71278
Target:  5'- gGuCGGgacCGAGGGGCGCAGGuuGAgGCGg -3'
miRNA:   3'- gCuGCC---GCUCCUCGCGUCCu-UUgCGU- -5'
16133 3' -57.6 NC_004065.1 + 200944 0.71 0.71278
Target:  5'- --cCGcCucGGAGCGCAGGGAGCGCGg -3'
miRNA:   3'- gcuGCcGcuCCUCGCGUCCUUUGCGU- -5'
16133 3' -57.6 NC_004065.1 + 70506 0.7 0.730852
Target:  5'- gCGAUGGCGGcgcccuucucgacGGAGCuGCAGGcgcgccugcAGGCGCGa -3'
miRNA:   3'- -GCUGCCGCU-------------CCUCG-CGUCC---------UUUGCGU- -5'
16133 3' -57.6 NC_004065.1 + 113749 0.7 0.731796
Target:  5'- --cCGGCGAGGAG-GCcgAGGGAcaGCGCGg -3'
miRNA:   3'- gcuGCCGCUCCUCgCG--UCCUU--UGCGU- -5'
16133 3' -57.6 NC_004065.1 + 200852 0.7 0.731796
Target:  5'- gGAguuCGGCGucgacGGGGGCGCGGGcGGugGCGa -3'
miRNA:   3'- gCU---GCCGC-----UCCUCGCGUCC-UUugCGU- -5'
16133 3' -57.6 NC_004065.1 + 46710 0.7 0.740253
Target:  5'- aGACGaaaucccuguuccGCGAGGucGCGCAcGAGGCGCAc -3'
miRNA:   3'- gCUGC-------------CGCUCCu-CGCGUcCUUUGCGU- -5'
16133 3' -57.6 NC_004065.1 + 98393 0.7 0.759701
Target:  5'- uGGUGGCGAGGAGgGCGauGaGAGugGCGg -3'
miRNA:   3'- gCUGCCGCUCCUCgCGU--C-CUUugCGU- -5'
16133 3' -57.6 NC_004065.1 + 30873 0.71 0.71278
Target:  5'- uCGACGGCGGGuucGAGCGCccgcagggcgucGGGGu-CGCAc -3'
miRNA:   3'- -GCUGCCGCUC---CUCGCG------------UCCUuuGCGU- -5'
16133 3' -57.6 NC_004065.1 + 61666 0.71 0.674053
Target:  5'- aCGAUGGCGGuguaGAGCGCgAGGGGucCGCAg -3'
miRNA:   3'- -GCUGCCGCUc---CUCGCG-UCCUUu-GCGU- -5'
16133 3' -57.6 NC_004065.1 + 96274 0.72 0.624985
Target:  5'- gGACGGCGGGGcGGC-CAGGGgcgucacgGACGCc -3'
miRNA:   3'- gCUGCCGCUCC-UCGcGUCCU--------UUGCGu -5'
16133 3' -57.6 NC_004065.1 + 62376 0.78 0.305688
Target:  5'- uGGCGGCGGGGgugguGGCgGCGGGGGugGCGg -3'
miRNA:   3'- gCUGCCGCUCC-----UCG-CGUCCUUugCGU- -5'
16133 3' -57.6 NC_004065.1 + 75490 0.78 0.312516
Target:  5'- gCGGCGGCGAGGAucaggGCGCAGuGAAuaGCGUu -3'
miRNA:   3'- -GCUGCCGCUCCU-----CGCGUC-CUU--UGCGu -5'
16133 3' -57.6 NC_004065.1 + 228993 0.78 0.325806
Target:  5'- aCGaACGGCGAgGGAGCGCGcGGAGcgagaucGCGCAc -3'
miRNA:   3'- -GC-UGCCGCU-CCUCGCGU-CCUU-------UGCGU- -5'
16133 3' -57.6 NC_004065.1 + 91755 0.74 0.499882
Target:  5'- aGACGGCG-GGAGCGaCGGGGgcGAgGCu -3'
miRNA:   3'- gCUGCCGCuCCUCGC-GUCCU--UUgCGu -5'
16133 3' -57.6 NC_004065.1 + 48106 0.74 0.509181
Target:  5'- gCGGCGGCGGuGGcggcGGCGguGGGAccucGCGCAc -3'
miRNA:   3'- -GCUGCCGCU-CC----UCGCguCCUU----UGCGU- -5'
16133 3' -57.6 NC_004065.1 + 30122 0.74 0.518552
Target:  5'- cCGGCGGCcuGGGGAGgGCGGGugGCGgAg -3'
miRNA:   3'- -GCUGCCG--CUCCUCgCGUCCuuUGCgU- -5'
16133 3' -57.6 NC_004065.1 + 112169 0.73 0.566329
Target:  5'- gGACGGCGGGGAGaaGgAGGGugUGCAg -3'
miRNA:   3'- gCUGCCGCUCCUCg-CgUCCUuuGCGU- -5'
16133 3' -57.6 NC_004065.1 + 46887 0.72 0.615157
Target:  5'- uGACGGCGAGGAuGCacgGCuggAGGggGcCGCGa -3'
miRNA:   3'- gCUGCCGCUCCU-CG---CG---UCCuuU-GCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.