Results 41 - 60 of 138 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
16133 | 3' | -57.6 | NC_004065.1 | + | 48106 | 0.74 | 0.509181 |
Target: 5'- gCGGCGGCGGuGGcggcGGCGguGGGAccucGCGCAc -3' miRNA: 3'- -GCUGCCGCU-CC----UCGCguCCUU----UGCGU- -5' |
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16133 | 3' | -57.6 | NC_004065.1 | + | 91755 | 0.74 | 0.499882 |
Target: 5'- aGACGGCG-GGAGCGaCGGGGgcGAgGCu -3' miRNA: 3'- gCUGCCGCuCCUCGC-GUCCU--UUgCGu -5' |
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16133 | 3' | -57.6 | NC_004065.1 | + | 228993 | 0.78 | 0.325806 |
Target: 5'- aCGaACGGCGAgGGAGCGCGcGGAGcgagaucGCGCAc -3' miRNA: 3'- -GC-UGCCGCU-CCUCGCGU-CCUU-------UGCGU- -5' |
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16133 | 3' | -57.6 | NC_004065.1 | + | 75490 | 0.78 | 0.312516 |
Target: 5'- gCGGCGGCGAGGAucaggGCGCAGuGAAuaGCGUu -3' miRNA: 3'- -GCUGCCGCUCCU-----CGCGUC-CUU--UGCGu -5' |
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16133 | 3' | -57.6 | NC_004065.1 | + | 62376 | 0.78 | 0.305688 |
Target: 5'- uGGCGGCGGGGgugguGGCgGCGGGGGugGCGg -3' miRNA: 3'- gCUGCCGCUCC-----UCG-CGUCCUUugCGU- -5' |
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16133 | 3' | -57.6 | NC_004065.1 | + | 200944 | 0.71 | 0.71278 |
Target: 5'- --cCGcCucGGAGCGCAGGGAGCGCGg -3' miRNA: 3'- gcuGCcGcuCCUCGCGUCCUUUGCGU- -5' |
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16133 | 3' | -57.6 | NC_004065.1 | + | 70506 | 0.7 | 0.730852 |
Target: 5'- gCGAUGGCGGcgcccuucucgacGGAGCuGCAGGcgcgccugcAGGCGCGa -3' miRNA: 3'- -GCUGCCGCU-------------CCUCG-CGUCC---------UUUGCGU- -5' |
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16133 | 3' | -57.6 | NC_004065.1 | + | 25686 | 0.68 | 0.82895 |
Target: 5'- aGGCGGCGAGGuaguagauGGCGUcguccgGGGGccCGCGa -3' miRNA: 3'- gCUGCCGCUCC--------UCGCG------UCCUuuGCGU- -5' |
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16133 | 3' | -57.6 | NC_004065.1 | + | 67381 | 0.68 | 0.826521 |
Target: 5'- uGACGGUcggcgugcacacgaGAGGggugaucguGGCGCGGGggGCGa- -3' miRNA: 3'- gCUGCCG--------------CUCC---------UCGCGUCCuuUGCgu -5' |
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16133 | 3' | -57.6 | NC_004065.1 | + | 23607 | 0.69 | 0.812483 |
Target: 5'- aGGCGGUGAGGcGgGCAGGcggguGGACGg- -3' miRNA: 3'- gCUGCCGCUCCuCgCGUCC-----UUUGCgu -5' |
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16133 | 3' | -57.6 | NC_004065.1 | + | 200801 | 0.69 | 0.80402 |
Target: 5'- gCGACGGCGucucGGCGCGGGGAucggACGgGg -3' miRNA: 3'- -GCUGCCGCucc-UCGCGUCCUU----UGCgU- -5' |
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16133 | 3' | -57.6 | NC_004065.1 | + | 124979 | 0.69 | 0.80402 |
Target: 5'- gGGCGGCcAGaGGCGCGGGucgugcAGCGCGc -3' miRNA: 3'- gCUGCCGcUCcUCGCGUCCu-----UUGCGU- -5' |
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16133 | 3' | -57.6 | NC_004065.1 | + | 58896 | 0.69 | 0.80402 |
Target: 5'- uGACGGUcuggacGAuGAGCGCGGGGGugGgCAg -3' miRNA: 3'- gCUGCCG------CUcCUCGCGUCCUUugC-GU- -5' |
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16133 | 3' | -57.6 | NC_004065.1 | + | 65701 | 0.69 | 0.786669 |
Target: 5'- gGGCGuGCGAgcugguGGAcGCGCAGGA--CGCAc -3' miRNA: 3'- gCUGC-CGCU------CCU-CGCGUCCUuuGCGU- -5' |
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16133 | 3' | -57.6 | NC_004065.1 | + | 89252 | 0.69 | 0.777798 |
Target: 5'- uGACGGUGAGGA-----GGAAGCGCAc -3' miRNA: 3'- gCUGCCGCUCCUcgcguCCUUUGCGU- -5' |
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16133 | 3' | -57.6 | NC_004065.1 | + | 68652 | 0.69 | 0.777798 |
Target: 5'- aGGCGGcCGAGGcguacGCGCAGucGGCGUAc -3' miRNA: 3'- gCUGCC-GCUCCu----CGCGUCcuUUGCGU- -5' |
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16133 | 3' | -57.6 | NC_004065.1 | + | 98393 | 0.7 | 0.759701 |
Target: 5'- uGGUGGCGAGGAGgGCGauGaGAGugGCGg -3' miRNA: 3'- gCUGCCGCUCCUCgCGU--C-CUUugCGU- -5' |
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16133 | 3' | -57.6 | NC_004065.1 | + | 46710 | 0.7 | 0.740253 |
Target: 5'- aGACGaaaucccuguuccGCGAGGucGCGCAcGAGGCGCAc -3' miRNA: 3'- gCUGC-------------CGCUCCu-CGCGUcCUUUGCGU- -5' |
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16133 | 3' | -57.6 | NC_004065.1 | + | 200852 | 0.7 | 0.731796 |
Target: 5'- gGAguuCGGCGucgacGGGGGCGCGGGcGGugGCGa -3' miRNA: 3'- gCU---GCCGC-----UCCUCGCGUCC-UUugCGU- -5' |
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16133 | 3' | -57.6 | NC_004065.1 | + | 113749 | 0.7 | 0.731796 |
Target: 5'- --cCGGCGAGGAG-GCcgAGGGAcaGCGCGg -3' miRNA: 3'- gcuGCCGCUCCUCgCG--UCCUU--UGCGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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