miRNA display CGI


Results 1 - 20 of 138 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16133 3' -57.6 NC_004065.1 + 70344 0.83 0.162466
Target:  5'- aCGGCGGCGAGGAGCGCcucGGguAUGCu -3'
miRNA:   3'- -GCUGCCGCUCCUCGCGu--CCuuUGCGu -5'
16133 3' -57.6 NC_004065.1 + 172087 0.71 0.703173
Target:  5'- uGugGGUgGAGGGGC-CGGGGGAgGCGg -3'
miRNA:   3'- gCugCCG-CUCCUCGcGUCCUUUgCGU- -5'
16133 3' -57.6 NC_004065.1 + 80799 0.7 0.722324
Target:  5'- gCGGCGGCGGcGGcGGCaGCGGGAgcAGCGaCAg -3'
miRNA:   3'- -GCUGCCGCU-CC-UCG-CGUCCU--UUGC-GU- -5'
16133 3' -57.6 NC_004065.1 + 211149 0.66 0.927895
Target:  5'- cCGuuCGGgGGGGAGCGggcgugcCGGGAuguCGCAc -3'
miRNA:   3'- -GCu-GCCgCUCCUCGC-------GUCCUuu-GCGU- -5'
16133 3' -57.6 NC_004065.1 + 93604 0.79 0.285894
Target:  5'- uGACGGggaUGAGGGGgGcCAGGAGACGCAu -3'
miRNA:   3'- gCUGCC---GCUCCUCgC-GUCCUUUGCGU- -5'
16133 3' -57.6 NC_004065.1 + 83582 0.77 0.387085
Target:  5'- gCGACGGCGGGGaAGC-CGGGGAagaagacggaGCGCGg -3'
miRNA:   3'- -GCUGCCGCUCC-UCGcGUCCUU----------UGCGU- -5'
16133 3' -57.6 NC_004065.1 + 91794 0.75 0.44319
Target:  5'- aCGGCGGCGAGcgccucgacauccaGAGCGCGGucGAGACGUc -3'
miRNA:   3'- -GCUGCCGCUC--------------CUCGCGUC--CUUUGCGu -5'
16133 3' -57.6 NC_004065.1 + 181131 0.75 0.454598
Target:  5'- gCGGCGGCGGGGAGagaaaaCGUAGGGuaacaaccGCGCAc -3'
miRNA:   3'- -GCUGCCGCUCCUC------GCGUCCUu-------UGCGU- -5'
16133 3' -57.6 NC_004065.1 + 42234 0.74 0.499882
Target:  5'- gGAuCGGCGGGGGGCGCgauAGGGggUGUc -3'
miRNA:   3'- gCU-GCCGCUCCUCGCG---UCCUuuGCGu -5'
16133 3' -57.6 NC_004065.1 + 228317 0.71 0.664272
Target:  5'- gGACGGCGGGugcuuuGGGCGguGG-GACGUAc -3'
miRNA:   3'- gCUGCCGCUC------CUCGCguCCuUUGCGU- -5'
16133 3' -57.6 NC_004065.1 + 53905 0.73 0.595546
Target:  5'- aGACGacGCGAGGAGCGCccgucAGGAuacCGCu -3'
miRNA:   3'- gCUGC--CGCUCCUCGCG-----UCCUuu-GCGu -5'
16133 3' -57.6 NC_004065.1 + 136768 0.75 0.481515
Target:  5'- -uGCGGgGGGaGAGCGUGGGGGAUGCGg -3'
miRNA:   3'- gcUGCCgCUC-CUCGCGUCCUUUGCGU- -5'
16133 3' -57.6 NC_004065.1 + 148873 0.83 0.174771
Target:  5'- gCGGCGGCGGGGGGCGaGGGGGACGa- -3'
miRNA:   3'- -GCUGCCGCUCCUCGCgUCCUUUGCgu -5'
16133 3' -57.6 NC_004065.1 + 99189 0.72 0.624985
Target:  5'- uCGAUGGCGAGcAGuCGCAGGuAGACGg- -3'
miRNA:   3'- -GCUGCCGCUCcUC-GCGUCC-UUUGCgu -5'
16133 3' -57.6 NC_004065.1 + 130174 0.82 0.201888
Target:  5'- aCGGCGGCGAucGGGGCGCAGacgcuGAAACGCc -3'
miRNA:   3'- -GCUGCCGCU--CCUCGCGUC-----CUUUGCGu -5'
16133 3' -57.6 NC_004065.1 + 22165 0.75 0.46706
Target:  5'- uGACGGUGAGGGGCGguGGGuugAgaucggucucucugaACGCGu -3'
miRNA:   3'- gCUGCCGCUCCUCGCguCCU---U---------------UGCGU- -5'
16133 3' -57.6 NC_004065.1 + 33666 0.72 0.654467
Target:  5'- cCGGCGcGCGGGGAGgGCcgcuGcGAGAUGCGa -3'
miRNA:   3'- -GCUGC-CGCUCCUCgCGu---C-CUUUGCGU- -5'
16133 3' -57.6 NC_004065.1 + 37420 0.7 0.722324
Target:  5'- cCGACGGCGcguucacgcuGGAGCGCGuGGAaGACGg- -3'
miRNA:   3'- -GCUGCCGCu---------CCUCGCGU-CCU-UUGCgu -5'
16133 3' -57.6 NC_004065.1 + 103707 0.8 0.249362
Target:  5'- gGGCGGCGGGGAGCGCcuGGcGGGCGUg -3'
miRNA:   3'- gCUGCCGCUCCUCGCGu-CC-UUUGCGu -5'
16133 3' -57.6 NC_004065.1 + 211389 0.76 0.427663
Target:  5'- aGACGGCaGAGGuggcggaGGCGgGGGAAACGUg -3'
miRNA:   3'- gCUGCCG-CUCC-------UCGCgUCCUUUGCGu -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.