miRNA display CGI


Results 21 - 40 of 138 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16133 3' -57.6 NC_004065.1 + 94630 0.7 0.741188
Target:  5'- uGACGGgGucGGGCGCGGccGGCGCGu -3'
miRNA:   3'- gCUGCCgCucCUCGCGUCcuUUGCGU- -5'
16133 3' -57.6 NC_004065.1 + 80799 0.7 0.722324
Target:  5'- gCGGCGGCGGcGGcGGCaGCGGGAgcAGCGaCAg -3'
miRNA:   3'- -GCUGCCGCU-CC-UCG-CGUCCU--UUGC-GU- -5'
16133 3' -57.6 NC_004065.1 + 136768 0.75 0.481515
Target:  5'- -uGCGGgGGGaGAGCGUGGGGGAUGCGg -3'
miRNA:   3'- gcUGCCgCUC-CUCGCGUCCUUUGCGU- -5'
16133 3' -57.6 NC_004065.1 + 103707 0.8 0.249362
Target:  5'- gGGCGGCGGGGAGCGCcuGGcGGGCGUg -3'
miRNA:   3'- gCUGCCGCUCCUCGCGu-CC-UUUGCGu -5'
16133 3' -57.6 NC_004065.1 + 104904 0.69 0.80402
Target:  5'- gCGACGGCGcGGuGGUGCcGGcgGCGUAc -3'
miRNA:   3'- -GCUGCCGCuCC-UCGCGuCCuuUGCGU- -5'
16133 3' -57.6 NC_004065.1 + 18936 0.69 0.777798
Target:  5'- aGACGGCGGGcAGCaGCuauauGGAcGGCGCAu -3'
miRNA:   3'- gCUGCCGCUCcUCG-CGu----CCU-UUGCGU- -5'
16133 3' -57.6 NC_004065.1 + 172087 0.71 0.703173
Target:  5'- uGugGGUgGAGGGGC-CGGGGGAgGCGg -3'
miRNA:   3'- gCugCCG-CUCCUCGcGUCCUUUgCGU- -5'
16133 3' -57.6 NC_004065.1 + 130174 0.82 0.201888
Target:  5'- aCGGCGGCGAucGGGGCGCAGacgcuGAAACGCc -3'
miRNA:   3'- -GCUGCCGCU--CCUCGCGUC-----CUUUGCGu -5'
16133 3' -57.6 NC_004065.1 + 90050 0.69 0.768806
Target:  5'- gCGACGGCGGGGuuuuuuucuCGCGGacGAAGCGUg -3'
miRNA:   3'- -GCUGCCGCUCCuc-------GCGUC--CUUUGCGu -5'
16133 3' -57.6 NC_004065.1 + 148873 0.83 0.174771
Target:  5'- gCGGCGGCGGGGGGCGaGGGGGACGa- -3'
miRNA:   3'- -GCUGCCGCUCCUCGCgUCCUUUGCgu -5'
16133 3' -57.6 NC_004065.1 + 37420 0.7 0.722324
Target:  5'- cCGACGGCGcguucacgcuGGAGCGCGuGGAaGACGg- -3'
miRNA:   3'- -GCUGCCGCu---------CCUCGCGU-CCU-UUGCgu -5'
16133 3' -57.6 NC_004065.1 + 130690 0.7 0.741188
Target:  5'- ---gGGCGAGGAgGCGgaggagaAGGAGGCGCGu -3'
miRNA:   3'- gcugCCGCUCCU-CGCg------UCCUUUGCGU- -5'
16133 3' -57.6 NC_004065.1 + 99189 0.72 0.624985
Target:  5'- uCGAUGGCGAGcAGuCGCAGGuAGACGg- -3'
miRNA:   3'- -GCUGCCGCUCcUC-GCGUCC-UUUGCgu -5'
16133 3' -57.6 NC_004065.1 + 42234 0.74 0.499882
Target:  5'- gGAuCGGCGGGGGGCGCgauAGGGggUGUc -3'
miRNA:   3'- gCU-GCCGCUCCUCGCG---UCCUuuGCGu -5'
16133 3' -57.6 NC_004065.1 + 91794 0.75 0.44319
Target:  5'- aCGGCGGCGAGcgccucgacauccaGAGCGCGGucGAGACGUc -3'
miRNA:   3'- -GCUGCCGCUC--------------CUCGCGUC--CUUUGCGu -5'
16133 3' -57.6 NC_004065.1 + 93604 0.79 0.285894
Target:  5'- uGACGGggaUGAGGGGgGcCAGGAGACGCAu -3'
miRNA:   3'- gCUGCC---GCUCCUCgC-GUCCUUUGCGU- -5'
16133 3' -57.6 NC_004065.1 + 88454 0.68 0.82895
Target:  5'- ---gGGCGAGGGcGuCGCAGGucuuGCGCGc -3'
miRNA:   3'- gcugCCGCUCCU-C-GCGUCCuu--UGCGU- -5'
16133 3' -57.6 NC_004065.1 + 162442 0.69 0.80402
Target:  5'- cCGACGGCGAGaucAGCGUcgugcGGcAGCGCGu -3'
miRNA:   3'- -GCUGCCGCUCc--UCGCGu----CCuUUGCGU- -5'
16133 3' -57.6 NC_004065.1 + 105137 0.69 0.785788
Target:  5'- gCGGCGcacauCGAGGAGCGCAacccgggcaccucGGAcguGGCGCGg -3'
miRNA:   3'- -GCUGCc----GCUCCUCGCGU-------------CCU---UUGCGU- -5'
16133 3' -57.6 NC_004065.1 + 115581 0.69 0.777798
Target:  5'- aGACGGCGGuGGugguGGCgGCGGGAGAUGa- -3'
miRNA:   3'- gCUGCCGCU-CC----UCG-CGUCCUUUGCgu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.