miRNA display CGI


Results 1 - 20 of 85 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16133 5' -55.7 NC_004065.1 + 202106 0.66 0.964419
Target:  5'- uCUGUCGg--CGGCGCUCgcguUCCugCAUc -3'
miRNA:   3'- uGGUAGCuaaGCCGCGAG----AGGugGUG- -5'
16133 5' -55.7 NC_004065.1 + 37492 0.66 0.964419
Target:  5'- gGCUGUgCGGaccccUGGCgGCUCUCCGCCAa -3'
miRNA:   3'- -UGGUA-GCUaa---GCCG-CGAGAGGUGGUg -5'
16133 5' -55.7 NC_004065.1 + 174242 0.66 0.964095
Target:  5'- aGCCG-CGAUcgccugcUCGGCGC-CgagaCCGCCAUc -3'
miRNA:   3'- -UGGUaGCUA-------AGCCGCGaGa---GGUGGUG- -5'
16133 5' -55.7 NC_004065.1 + 117457 0.66 0.963769
Target:  5'- -gCGUCGuccggcuccgCGGcCGCUCgCCGCCACc -3'
miRNA:   3'- ugGUAGCuaa-------GCC-GCGAGaGGUGGUG- -5'
16133 5' -55.7 NC_004065.1 + 163272 0.66 0.961084
Target:  5'- gACCGUCucUUCGGuCGCgacgCCGCCGg -3'
miRNA:   3'- -UGGUAGcuAAGCC-GCGaga-GGUGGUg -5'
16133 5' -55.7 NC_004065.1 + 181717 0.66 0.961084
Target:  5'- cAUCAUCGAUcccuUCGGCGCcaUCUUCGgaUACg -3'
miRNA:   3'- -UGGUAGCUA----AGCCGCG--AGAGGUg-GUG- -5'
16133 5' -55.7 NC_004065.1 + 153630 0.66 0.961084
Target:  5'- cGCCAcUCGGacggCGGCgaGCUCaUCCGCgGCg -3'
miRNA:   3'- -UGGU-AGCUaa--GCCG--CGAG-AGGUGgUG- -5'
16133 5' -55.7 NC_004065.1 + 71756 0.66 0.960739
Target:  5'- uACCgGUCGGUgaccgugUUGGCGUcgaUCgCCGCCACu -3'
miRNA:   3'- -UGG-UAGCUA-------AGCCGCG---AGaGGUGGUG- -5'
16133 5' -55.7 NC_004065.1 + 210542 0.66 0.958983
Target:  5'- cCCAUCGcgacgaUgGGCGCUCcaccgacucccgucCCACCACg -3'
miRNA:   3'- uGGUAGCua----AgCCGCGAGa-------------GGUGGUG- -5'
16133 5' -55.7 NC_004065.1 + 36252 0.66 0.957539
Target:  5'- uCCGcUCGGagCGGCGCUUUUCGCUggaGCa -3'
miRNA:   3'- uGGU-AGCUaaGCCGCGAGAGGUGG---UG- -5'
16133 5' -55.7 NC_004065.1 + 119827 0.66 0.957539
Target:  5'- cCCucUCGAcgggcggCGGCGCgUCgcggCCGCCGCa -3'
miRNA:   3'- uGGu-AGCUaa-----GCCGCG-AGa---GGUGGUG- -5'
16133 5' -55.7 NC_004065.1 + 53545 0.66 0.957539
Target:  5'- cACCGUCc---CGGUGC-CUCCGCCu- -3'
miRNA:   3'- -UGGUAGcuaaGCCGCGaGAGGUGGug -5'
16133 5' -55.7 NC_004065.1 + 25703 0.66 0.957539
Target:  5'- uACCA------CGGCGCUCUCgACUACu -3'
miRNA:   3'- -UGGUagcuaaGCCGCGAGAGgUGGUG- -5'
16133 5' -55.7 NC_004065.1 + 21965 0.66 0.957539
Target:  5'- gGCCGUCG--UCGGCaGgaCggugagggCCGCCACg -3'
miRNA:   3'- -UGGUAGCuaAGCCG-CgaGa-------GGUGGUG- -5'
16133 5' -55.7 NC_004065.1 + 119630 0.66 0.957539
Target:  5'- cGCCGUCGGccgUGGCGUguUCgaacggCCugCGCg -3'
miRNA:   3'- -UGGUAGCUaa-GCCGCG--AGa-----GGugGUG- -5'
16133 5' -55.7 NC_004065.1 + 200874 0.66 0.95378
Target:  5'- aACUAUCGAUUCaGgGCUCggCUGCC-Cg -3'
miRNA:   3'- -UGGUAGCUAAGcCgCGAGa-GGUGGuG- -5'
16133 5' -55.7 NC_004065.1 + 152841 0.66 0.95378
Target:  5'- -aCGUCGAUcgaggUCGGCaGCcagagCCACCGCa -3'
miRNA:   3'- ugGUAGCUA-----AGCCG-CGaga--GGUGGUG- -5'
16133 5' -55.7 NC_004065.1 + 44534 0.66 0.95378
Target:  5'- uACCGgggaCGGUggCGGCGCUgcCUCCcgacCCGCa -3'
miRNA:   3'- -UGGUa---GCUAa-GCCGCGA--GAGGu---GGUG- -5'
16133 5' -55.7 NC_004065.1 + 172082 0.66 0.953392
Target:  5'- cGCCG-CGGUUCGagcgggggacguaGCGCggCUCCuCCGCa -3'
miRNA:   3'- -UGGUaGCUAAGC-------------CGCGa-GAGGuGGUG- -5'
16133 5' -55.7 NC_004065.1 + 83393 0.66 0.949802
Target:  5'- aGCCcgUGA--CGGCGUUCaCCACCGa -3'
miRNA:   3'- -UGGuaGCUaaGCCGCGAGaGGUGGUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.