miRNA display CGI


Results 1 - 20 of 85 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16133 5' -55.7 NC_004065.1 + 44534 0.66 0.95378
Target:  5'- uACCGgggaCGGUggCGGCGCUgcCUCCcgacCCGCa -3'
miRNA:   3'- -UGGUa---GCUAa-GCCGCGA--GAGGu---GGUG- -5'
16133 5' -55.7 NC_004065.1 + 64116 0.66 0.949802
Target:  5'- cACCuUCGGgcCGGCGCagaaagggcuUCUCCucCCGCu -3'
miRNA:   3'- -UGGuAGCUaaGCCGCG----------AGAGGu-GGUG- -5'
16133 5' -55.7 NC_004065.1 + 135305 0.66 0.949802
Target:  5'- cGCCGcCGAcUUCGGCccGCUCgagCCGCCc- -3'
miRNA:   3'- -UGGUaGCU-AAGCCG--CGAGa--GGUGGug -5'
16133 5' -55.7 NC_004065.1 + 172082 0.66 0.953392
Target:  5'- cGCCG-CGGUUCGagcgggggacguaGCGCggCUCCuCCGCa -3'
miRNA:   3'- -UGGUaGCUAAGC-------------CGCGa-GAGGuGGUG- -5'
16133 5' -55.7 NC_004065.1 + 196057 0.66 0.949802
Target:  5'- aGCCAUCG--UCGGgGCccgugaUgUCCAUCGCg -3'
miRNA:   3'- -UGGUAGCuaAGCCgCG------AgAGGUGGUG- -5'
16133 5' -55.7 NC_004065.1 + 199930 0.66 0.949802
Target:  5'- uCCGUCccuGAcacaUCaGCGCgcgCUCCGCCACg -3'
miRNA:   3'- uGGUAG---CUa---AGcCGCGa--GAGGUGGUG- -5'
16133 5' -55.7 NC_004065.1 + 152841 0.66 0.95378
Target:  5'- -aCGUCGAUcgaggUCGGCaGCcagagCCACCGCa -3'
miRNA:   3'- ugGUAGCUA-----AGCCG-CGaga--GGUGGUG- -5'
16133 5' -55.7 NC_004065.1 + 36252 0.66 0.957539
Target:  5'- uCCGcUCGGagCGGCGCUUUUCGCUggaGCa -3'
miRNA:   3'- uGGU-AGCUaaGCCGCGAGAGGUGG---UG- -5'
16133 5' -55.7 NC_004065.1 + 53545 0.66 0.957539
Target:  5'- cACCGUCc---CGGUGC-CUCCGCCu- -3'
miRNA:   3'- -UGGUAGcuaaGCCGCGaGAGGUGGug -5'
16133 5' -55.7 NC_004065.1 + 17794 0.66 0.949802
Target:  5'- gGCCGUCGcGUUUGGCGCga-UC-CCGCg -3'
miRNA:   3'- -UGGUAGC-UAAGCCGCGagaGGuGGUG- -5'
16133 5' -55.7 NC_004065.1 + 195772 0.66 0.949802
Target:  5'- gACCAUCGAaacgcaGGuCGCgUCUCUgggcGCCGCg -3'
miRNA:   3'- -UGGUAGCUaag---CC-GCG-AGAGG----UGGUG- -5'
16133 5' -55.7 NC_004065.1 + 138221 0.66 0.949802
Target:  5'- gACCGcgcucugCGAUgucgaGGCGCUCgCCGCCGu -3'
miRNA:   3'- -UGGUa------GCUAag---CCGCGAGaGGUGGUg -5'
16133 5' -55.7 NC_004065.1 + 117457 0.66 0.963769
Target:  5'- -gCGUCGuccggcuccgCGGcCGCUCgCCGCCACc -3'
miRNA:   3'- ugGUAGCuaa-------GCC-GCGAGaGGUGGUG- -5'
16133 5' -55.7 NC_004065.1 + 163272 0.66 0.961084
Target:  5'- gACCGUCucUUCGGuCGCgacgCCGCCGg -3'
miRNA:   3'- -UGGUAGcuAAGCC-GCGaga-GGUGGUg -5'
16133 5' -55.7 NC_004065.1 + 136684 0.66 0.949802
Target:  5'- gGCCGgcggCGGgcCGGCucgaGCUUuuaUCCGCCACg -3'
miRNA:   3'- -UGGUa---GCUaaGCCG----CGAG---AGGUGGUG- -5'
16133 5' -55.7 NC_004065.1 + 202106 0.66 0.964419
Target:  5'- uCUGUCGg--CGGCGCUCgcguUCCugCAUc -3'
miRNA:   3'- uGGUAGCuaaGCCGCGAG----AGGugGUG- -5'
16133 5' -55.7 NC_004065.1 + 71756 0.66 0.960739
Target:  5'- uACCgGUCGGUgaccgugUUGGCGUcgaUCgCCGCCACu -3'
miRNA:   3'- -UGG-UAGCUA-------AGCCGCG---AGaGGUGGUG- -5'
16133 5' -55.7 NC_004065.1 + 83393 0.66 0.949802
Target:  5'- aGCCcgUGA--CGGCGUUCaCCACCGa -3'
miRNA:   3'- -UGGuaGCUaaGCCGCGAGaGGUGGUg -5'
16133 5' -55.7 NC_004065.1 + 43863 0.66 0.945602
Target:  5'- cGCCGUgGAgUUCGGUgGCggcCUCCACgGCc -3'
miRNA:   3'- -UGGUAgCU-AAGCCG-CGa--GAGGUGgUG- -5'
16133 5' -55.7 NC_004065.1 + 37492 0.66 0.964419
Target:  5'- gGCUGUgCGGaccccUGGCgGCUCUCCGCCAa -3'
miRNA:   3'- -UGGUA-GCUaa---GCCG-CGAGAGGUGGUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.