Results 21 - 40 of 85 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
16133 | 5' | -55.7 | NC_004065.1 | + | 153630 | 0.66 | 0.961084 |
Target: 5'- cGCCAcUCGGacggCGGCgaGCUCaUCCGCgGCg -3' miRNA: 3'- -UGGU-AGCUaa--GCCG--CGAG-AGGUGgUG- -5' |
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16133 | 5' | -55.7 | NC_004065.1 | + | 37492 | 0.66 | 0.964419 |
Target: 5'- gGCUGUgCGGaccccUGGCgGCUCUCCGCCAa -3' miRNA: 3'- -UGGUA-GCUaa---GCCG-CGAGAGGUGGUg -5' |
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16133 | 5' | -55.7 | NC_004065.1 | + | 117457 | 0.66 | 0.963769 |
Target: 5'- -gCGUCGuccggcuccgCGGcCGCUCgCCGCCACc -3' miRNA: 3'- ugGUAGCuaa-------GCC-GCGAGaGGUGGUG- -5' |
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16133 | 5' | -55.7 | NC_004065.1 | + | 71756 | 0.66 | 0.960739 |
Target: 5'- uACCgGUCGGUgaccgugUUGGCGUcgaUCgCCGCCACu -3' miRNA: 3'- -UGG-UAGCUA-------AGCCGCG---AGaGGUGGUG- -5' |
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16133 | 5' | -55.7 | NC_004065.1 | + | 163272 | 0.66 | 0.961084 |
Target: 5'- gACCGUCucUUCGGuCGCgacgCCGCCGg -3' miRNA: 3'- -UGGUAGcuAAGCC-GCGaga-GGUGGUg -5' |
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16133 | 5' | -55.7 | NC_004065.1 | + | 21965 | 0.66 | 0.957539 |
Target: 5'- gGCCGUCG--UCGGCaGgaCggugagggCCGCCACg -3' miRNA: 3'- -UGGUAGCuaAGCCG-CgaGa-------GGUGGUG- -5' |
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16133 | 5' | -55.7 | NC_004065.1 | + | 53545 | 0.66 | 0.957539 |
Target: 5'- cACCGUCc---CGGUGC-CUCCGCCu- -3' miRNA: 3'- -UGGUAGcuaaGCCGCGaGAGGUGGug -5' |
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16133 | 5' | -55.7 | NC_004065.1 | + | 174242 | 0.66 | 0.964095 |
Target: 5'- aGCCG-CGAUcgccugcUCGGCGC-CgagaCCGCCAUc -3' miRNA: 3'- -UGGUaGCUA-------AGCCGCGaGa---GGUGGUG- -5' |
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16133 | 5' | -55.7 | NC_004065.1 | + | 181717 | 0.66 | 0.961084 |
Target: 5'- cAUCAUCGAUcccuUCGGCGCcaUCUUCGgaUACg -3' miRNA: 3'- -UGGUAGCUA----AGCCGCG--AGAGGUg-GUG- -5' |
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16133 | 5' | -55.7 | NC_004065.1 | + | 194612 | 0.67 | 0.936528 |
Target: 5'- aGCCGUCGuccCGGUaCUCUcCCACgGCg -3' miRNA: 3'- -UGGUAGCuaaGCCGcGAGA-GGUGgUG- -5' |
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16133 | 5' | -55.7 | NC_004065.1 | + | 111696 | 0.67 | 0.93165 |
Target: 5'- cGCCAUgGAcgUCGGCGgUC-CCGCUg- -3' miRNA: 3'- -UGGUAgCUa-AGCCGCgAGaGGUGGug -5' |
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16133 | 5' | -55.7 | NC_004065.1 | + | 43695 | 0.67 | 0.93165 |
Target: 5'- gACCGUUGcacaugggguAUUCcuuGCGCagcuUCUCCGCCACg -3' miRNA: 3'- -UGGUAGC----------UAAGc--CGCG----AGAGGUGGUG- -5' |
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16133 | 5' | -55.7 | NC_004065.1 | + | 162280 | 0.67 | 0.936528 |
Target: 5'- cGCCGUCGGacgCGGCGCcgCUCgGCa-- -3' miRNA: 3'- -UGGUAGCUaa-GCCGCGa-GAGgUGgug -5' |
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16133 | 5' | -55.7 | NC_004065.1 | + | 123253 | 0.67 | 0.926543 |
Target: 5'- cACgAUCGAgUUGGUGCcCUCCACgCAg -3' miRNA: 3'- -UGgUAGCUaAGCCGCGaGAGGUG-GUg -5' |
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16133 | 5' | -55.7 | NC_004065.1 | + | 229446 | 0.67 | 0.926543 |
Target: 5'- cACCA-CGGggUGGCGCUg-CCGCCAg -3' miRNA: 3'- -UGGUaGCUaaGCCGCGAgaGGUGGUg -5' |
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16133 | 5' | -55.7 | NC_004065.1 | + | 61112 | 0.67 | 0.926543 |
Target: 5'- uGCCGUUGA-UC-GUGCUCUCgGCCGa -3' miRNA: 3'- -UGGUAGCUaAGcCGCGAGAGgUGGUg -5' |
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16133 | 5' | -55.7 | NC_004065.1 | + | 33531 | 0.67 | 0.921207 |
Target: 5'- gUCAUCGAcacgUUCGGCGCgaUCUACaCGCu -3' miRNA: 3'- uGGUAGCU----AAGCCGCGagAGGUG-GUG- -5' |
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16133 | 5' | -55.7 | NC_004065.1 | + | 2566 | 0.67 | 0.931149 |
Target: 5'- uACC-UCGAcgaccacUUCGGCaGCUaaaUCUGCCACa -3' miRNA: 3'- -UGGuAGCU-------AAGCCG-CGAg--AGGUGGUG- -5' |
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16133 | 5' | -55.7 | NC_004065.1 | + | 174690 | 0.67 | 0.936528 |
Target: 5'- uCCGUCGggUCcGUGUccgUUUCCGCCGCu -3' miRNA: 3'- uGGUAGCuaAGcCGCG---AGAGGUGGUG- -5' |
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16133 | 5' | -55.7 | NC_004065.1 | + | 126318 | 0.67 | 0.941178 |
Target: 5'- cGCCcgCca---GGCGCUCcCCGCCGCc -3' miRNA: 3'- -UGGuaGcuaagCCGCGAGaGGUGGUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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