miRNA display CGI


Results 1 - 20 of 85 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16133 5' -55.7 NC_004065.1 + 139354 1.08 0.005109
Target:  5'- gACCAUCGAUUCGGCGCUCUCCACCACc -3'
miRNA:   3'- -UGGUAGCUAAGCCGCGAGAGGUGGUG- -5'
16133 5' -55.7 NC_004065.1 + 85613 0.76 0.487981
Target:  5'- gAUCAUCGAgUCGGUGCUgUCgCGCUACa -3'
miRNA:   3'- -UGGUAGCUaAGCCGCGAgAG-GUGGUG- -5'
16133 5' -55.7 NC_004065.1 + 126617 0.75 0.535596
Target:  5'- uCCAUCGcgUCGGCcguGUUUUUCACCGCa -3'
miRNA:   3'- uGGUAGCuaAGCCG---CGAGAGGUGGUG- -5'
16133 5' -55.7 NC_004065.1 + 161425 0.75 0.564938
Target:  5'- uCCAggugCGAcgugUCGGCGCUCUggaucgccgCCGCCGCg -3'
miRNA:   3'- uGGUa---GCUa---AGCCGCGAGA---------GGUGGUG- -5'
16133 5' -55.7 NC_004065.1 + 185067 0.72 0.694454
Target:  5'- cGCUGUCGAaggUCGGUguGCUCUUCGCCGu -3'
miRNA:   3'- -UGGUAGCUa--AGCCG--CGAGAGGUGGUg -5'
16133 5' -55.7 NC_004065.1 + 168214 0.72 0.704289
Target:  5'- cGCCGUCGAgucCGuGCGCUgCUaCUGCCACg -3'
miRNA:   3'- -UGGUAGCUaa-GC-CGCGA-GA-GGUGGUG- -5'
16133 5' -55.7 NC_004065.1 + 196655 0.72 0.714067
Target:  5'- gGCCAguagCGcg-CGGCGuCUCUCaCGCCACc -3'
miRNA:   3'- -UGGUa---GCuaaGCCGC-GAGAG-GUGGUG- -5'
16133 5' -55.7 NC_004065.1 + 159903 0.72 0.723777
Target:  5'- uCUGUCGA-UCGGCGC-CgccgCCGCCGCu -3'
miRNA:   3'- uGGUAGCUaAGCCGCGaGa---GGUGGUG- -5'
16133 5' -55.7 NC_004065.1 + 76769 0.72 0.733412
Target:  5'- gUCAUCGuc-CGGCGCaUCgCCGCCGCg -3'
miRNA:   3'- uGGUAGCuaaGCCGCG-AGaGGUGGUG- -5'
16133 5' -55.7 NC_004065.1 + 205165 0.71 0.75148
Target:  5'- cACCGUCGAggccgccgUCgccgccaacaucgGGCGCcgcgugcgUCUCCACCACc -3'
miRNA:   3'- -UGGUAGCUa-------AG-------------CCGCG--------AGAGGUGGUG- -5'
16133 5' -55.7 NC_004065.1 + 209046 0.71 0.752422
Target:  5'- cACCAUCGA--CGGgGUUCgCCGCUACu -3'
miRNA:   3'- -UGGUAGCUaaGCCgCGAGaGGUGGUG- -5'
16133 5' -55.7 NC_004065.1 + 27521 0.71 0.789154
Target:  5'- uUCAUCG---CGGCGUgcCUCCACCACu -3'
miRNA:   3'- uGGUAGCuaaGCCGCGa-GAGGUGGUG- -5'
16133 5' -55.7 NC_004065.1 + 152819 0.71 0.789154
Target:  5'- gGCCAUCGccgugCGGgGCg--CCGCCGCg -3'
miRNA:   3'- -UGGUAGCuaa--GCCgCGagaGGUGGUG- -5'
16133 5' -55.7 NC_004065.1 + 99530 0.71 0.789154
Target:  5'- uCCGUCagcuggUCGGCGCUCccgUCuCGCCGCg -3'
miRNA:   3'- uGGUAGcua---AGCCGCGAG---AG-GUGGUG- -5'
16133 5' -55.7 NC_004065.1 + 127604 0.7 0.79802
Target:  5'- uACCGcugcUCGGgacCGGCGCUCUacgugCACCGCu -3'
miRNA:   3'- -UGGU----AGCUaa-GCCGCGAGAg----GUGGUG- -5'
16133 5' -55.7 NC_004065.1 + 187944 0.7 0.806742
Target:  5'- ----gUGuAUUCGGCGCUCUgUACCGCg -3'
miRNA:   3'- ugguaGC-UAAGCCGCGAGAgGUGGUG- -5'
16133 5' -55.7 NC_004065.1 + 111977 0.7 0.806742
Target:  5'- gGCCG-CGAUgaaGGCGCUCgagggggCCGCCuACg -3'
miRNA:   3'- -UGGUaGCUAag-CCGCGAGa------GGUGG-UG- -5'
16133 5' -55.7 NC_004065.1 + 1928 0.7 0.815312
Target:  5'- uCCAgucug-CGGCGUcgUCUCCACCGCg -3'
miRNA:   3'- uGGUagcuaaGCCGCG--AGAGGUGGUG- -5'
16133 5' -55.7 NC_004065.1 + 118299 0.7 0.831968
Target:  5'- cAUCAUCGuccucaUCGGCGUUCUCguCGCCAg -3'
miRNA:   3'- -UGGUAGCua----AGCCGCGAGAG--GUGGUg -5'
16133 5' -55.7 NC_004065.1 + 41339 0.7 0.831968
Target:  5'- gGCCAUCaGUUCGGCcugacgaccgucGuCUC-CCGCCGCg -3'
miRNA:   3'- -UGGUAGcUAAGCCG------------C-GAGaGGUGGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.