Results 41 - 60 of 85 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
16133 | 5' | -55.7 | NC_004065.1 | + | 37822 | 0.68 | 0.903833 |
Target: 5'- uGCCGUCGGagcUGcGCGCUCgCUACUACa -3' miRNA: 3'- -UGGUAGCUaa-GC-CGCGAGaGGUGGUG- -5' |
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16133 | 5' | -55.7 | NC_004065.1 | + | 115977 | 0.68 | 0.903833 |
Target: 5'- uCCAUCuGGgcgaagaGGCGCUCgUCCGCCGa -3' miRNA: 3'- uGGUAG-CUaag----CCGCGAG-AGGUGGUg -5' |
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16133 | 5' | -55.7 | NC_004065.1 | + | 201020 | 0.68 | 0.90985 |
Target: 5'- gGCCG-CGugcgcgCGGCGcCUCgCCACCGCc -3' miRNA: 3'- -UGGUaGCuaa---GCCGC-GAGaGGUGGUG- -5' |
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16133 | 5' | -55.7 | NC_004065.1 | + | 82233 | 0.67 | 0.920661 |
Target: 5'- aACUcuUCGAUcagguugugcgugUCGGUGCgUUCCACCACc -3' miRNA: 3'- -UGGu-AGCUA-------------AGCCGCGaGAGGUGGUG- -5' |
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16133 | 5' | -55.7 | NC_004065.1 | + | 33531 | 0.67 | 0.921207 |
Target: 5'- gUCAUCGAcacgUUCGGCGCgaUCUACaCGCu -3' miRNA: 3'- uGGUAGCU----AAGCCGCGagAGGUG-GUG- -5' |
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16133 | 5' | -55.7 | NC_004065.1 | + | 61112 | 0.67 | 0.926543 |
Target: 5'- uGCCGUUGA-UC-GUGCUCUCgGCCGa -3' miRNA: 3'- -UGGUAGCUaAGcCGCGAGAGgUGGUg -5' |
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16133 | 5' | -55.7 | NC_004065.1 | + | 123253 | 0.67 | 0.926543 |
Target: 5'- cACgAUCGAgUUGGUGCcCUCCACgCAg -3' miRNA: 3'- -UGgUAGCUaAGCCGCGaGAGGUG-GUg -5' |
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16133 | 5' | -55.7 | NC_004065.1 | + | 78884 | 0.67 | 0.926543 |
Target: 5'- cGCCGaCGAUcaucgCGGCGUUg-CCGCCGCc -3' miRNA: 3'- -UGGUaGCUAa----GCCGCGAgaGGUGGUG- -5' |
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16133 | 5' | -55.7 | NC_004065.1 | + | 229446 | 0.67 | 0.926543 |
Target: 5'- cACCA-CGGggUGGCGCUg-CCGCCAg -3' miRNA: 3'- -UGGUaGCUaaGCCGCGAgaGGUGGUg -5' |
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16133 | 5' | -55.7 | NC_004065.1 | + | 2566 | 0.67 | 0.931149 |
Target: 5'- uACC-UCGAcgaccacUUCGGCaGCUaaaUCUGCCACa -3' miRNA: 3'- -UGGuAGCU-------AAGCCG-CGAg--AGGUGGUG- -5' |
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16133 | 5' | -55.7 | NC_004065.1 | + | 43695 | 0.67 | 0.93165 |
Target: 5'- gACCGUUGcacaugggguAUUCcuuGCGCagcuUCUCCGCCACg -3' miRNA: 3'- -UGGUAGC----------UAAGc--CGCG----AGAGGUGGUG- -5' |
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16133 | 5' | -55.7 | NC_004065.1 | + | 111696 | 0.67 | 0.93165 |
Target: 5'- cGCCAUgGAcgUCGGCGgUC-CCGCUg- -3' miRNA: 3'- -UGGUAgCUa-AGCCGCgAGaGGUGGug -5' |
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16133 | 5' | -55.7 | NC_004065.1 | + | 174690 | 0.67 | 0.936528 |
Target: 5'- uCCGUCGggUCcGUGUccgUUUCCGCCGCu -3' miRNA: 3'- uGGUAGCuaAGcCGCG---AGAGGUGGUG- -5' |
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16133 | 5' | -55.7 | NC_004065.1 | + | 194612 | 0.67 | 0.936528 |
Target: 5'- aGCCGUCGuccCGGUaCUCUcCCACgGCg -3' miRNA: 3'- -UGGUAGCuaaGCCGcGAGA-GGUGgUG- -5' |
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16133 | 5' | -55.7 | NC_004065.1 | + | 162280 | 0.67 | 0.936528 |
Target: 5'- cGCCGUCGGacgCGGCGCcgCUCgGCa-- -3' miRNA: 3'- -UGGUAGCUaa-GCCGCGa-GAGgUGgug -5' |
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16133 | 5' | -55.7 | NC_004065.1 | + | 126318 | 0.67 | 0.941178 |
Target: 5'- cGCCcgCca---GGCGCUCcCCGCCGCc -3' miRNA: 3'- -UGGuaGcuaagCCGCGAGaGGUGGUG- -5' |
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16133 | 5' | -55.7 | NC_004065.1 | + | 43863 | 0.66 | 0.945602 |
Target: 5'- cGCCGUgGAgUUCGGUgGCggcCUCCACgGCc -3' miRNA: 3'- -UGGUAgCU-AAGCCG-CGa--GAGGUGgUG- -5' |
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16133 | 5' | -55.7 | NC_004065.1 | + | 196057 | 0.66 | 0.949802 |
Target: 5'- aGCCAUCG--UCGGgGCccgugaUgUCCAUCGCg -3' miRNA: 3'- -UGGUAGCuaAGCCgCG------AgAGGUGGUG- -5' |
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16133 | 5' | -55.7 | NC_004065.1 | + | 195772 | 0.66 | 0.949802 |
Target: 5'- gACCAUCGAaacgcaGGuCGCgUCUCUgggcGCCGCg -3' miRNA: 3'- -UGGUAGCUaag---CC-GCG-AGAGG----UGGUG- -5' |
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16133 | 5' | -55.7 | NC_004065.1 | + | 64116 | 0.66 | 0.949802 |
Target: 5'- cACCuUCGGgcCGGCGCagaaagggcuUCUCCucCCGCu -3' miRNA: 3'- -UGGuAGCUaaGCCGCG----------AGAGGu-GGUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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