miRNA display CGI


Results 21 - 40 of 85 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16133 5' -55.7 NC_004065.1 + 64116 0.66 0.949802
Target:  5'- cACCuUCGGgcCGGCGCagaaagggcuUCUCCucCCGCu -3'
miRNA:   3'- -UGGuAGCUaaGCCGCG----------AGAGGu-GGUG- -5'
16133 5' -55.7 NC_004065.1 + 83393 0.66 0.949802
Target:  5'- aGCCcgUGA--CGGCGUUCaCCACCGa -3'
miRNA:   3'- -UGGuaGCUaaGCCGCGAGaGGUGGUg -5'
16133 5' -55.7 NC_004065.1 + 135305 0.66 0.949802
Target:  5'- cGCCGcCGAcUUCGGCccGCUCgagCCGCCc- -3'
miRNA:   3'- -UGGUaGCU-AAGCCG--CGAGa--GGUGGug -5'
16133 5' -55.7 NC_004065.1 + 196057 0.66 0.949802
Target:  5'- aGCCAUCG--UCGGgGCccgugaUgUCCAUCGCg -3'
miRNA:   3'- -UGGUAGCuaAGCCgCG------AgAGGUGGUG- -5'
16133 5' -55.7 NC_004065.1 + 199930 0.66 0.949802
Target:  5'- uCCGUCccuGAcacaUCaGCGCgcgCUCCGCCACg -3'
miRNA:   3'- uGGUAG---CUa---AGcCGCGa--GAGGUGGUG- -5'
16133 5' -55.7 NC_004065.1 + 138221 0.66 0.949802
Target:  5'- gACCGcgcucugCGAUgucgaGGCGCUCgCCGCCGu -3'
miRNA:   3'- -UGGUa------GCUAag---CCGCGAGaGGUGGUg -5'
16133 5' -55.7 NC_004065.1 + 195772 0.66 0.949802
Target:  5'- gACCAUCGAaacgcaGGuCGCgUCUCUgggcGCCGCg -3'
miRNA:   3'- -UGGUAGCUaag---CC-GCG-AGAGG----UGGUG- -5'
16133 5' -55.7 NC_004065.1 + 136684 0.66 0.949802
Target:  5'- gGCCGgcggCGGgcCGGCucgaGCUUuuaUCCGCCACg -3'
miRNA:   3'- -UGGUa---GCUaaGCCG----CGAG---AGGUGGUG- -5'
16133 5' -55.7 NC_004065.1 + 43863 0.66 0.945602
Target:  5'- cGCCGUgGAgUUCGGUgGCggcCUCCACgGCc -3'
miRNA:   3'- -UGGUAgCU-AAGCCG-CGa--GAGGUGgUG- -5'
16133 5' -55.7 NC_004065.1 + 126318 0.67 0.941178
Target:  5'- cGCCcgCca---GGCGCUCcCCGCCGCc -3'
miRNA:   3'- -UGGuaGcuaagCCGCGAGaGGUGGUG- -5'
16133 5' -55.7 NC_004065.1 + 162280 0.67 0.936528
Target:  5'- cGCCGUCGGacgCGGCGCcgCUCgGCa-- -3'
miRNA:   3'- -UGGUAGCUaa-GCCGCGa-GAGgUGgug -5'
16133 5' -55.7 NC_004065.1 + 194612 0.67 0.936528
Target:  5'- aGCCGUCGuccCGGUaCUCUcCCACgGCg -3'
miRNA:   3'- -UGGUAGCuaaGCCGcGAGA-GGUGgUG- -5'
16133 5' -55.7 NC_004065.1 + 174690 0.67 0.936528
Target:  5'- uCCGUCGggUCcGUGUccgUUUCCGCCGCu -3'
miRNA:   3'- uGGUAGCuaAGcCGCG---AGAGGUGGUG- -5'
16133 5' -55.7 NC_004065.1 + 111696 0.67 0.93165
Target:  5'- cGCCAUgGAcgUCGGCGgUC-CCGCUg- -3'
miRNA:   3'- -UGGUAgCUa-AGCCGCgAGaGGUGGug -5'
16133 5' -55.7 NC_004065.1 + 43695 0.67 0.93165
Target:  5'- gACCGUUGcacaugggguAUUCcuuGCGCagcuUCUCCGCCACg -3'
miRNA:   3'- -UGGUAGC----------UAAGc--CGCG----AGAGGUGGUG- -5'
16133 5' -55.7 NC_004065.1 + 2566 0.67 0.931149
Target:  5'- uACC-UCGAcgaccacUUCGGCaGCUaaaUCUGCCACa -3'
miRNA:   3'- -UGGuAGCU-------AAGCCG-CGAg--AGGUGGUG- -5'
16133 5' -55.7 NC_004065.1 + 123253 0.67 0.926543
Target:  5'- cACgAUCGAgUUGGUGCcCUCCACgCAg -3'
miRNA:   3'- -UGgUAGCUaAGCCGCGaGAGGUG-GUg -5'
16133 5' -55.7 NC_004065.1 + 229446 0.67 0.926543
Target:  5'- cACCA-CGGggUGGCGCUg-CCGCCAg -3'
miRNA:   3'- -UGGUaGCUaaGCCGCGAgaGGUGGUg -5'
16133 5' -55.7 NC_004065.1 + 61112 0.67 0.926543
Target:  5'- uGCCGUUGA-UC-GUGCUCUCgGCCGa -3'
miRNA:   3'- -UGGUAGCUaAGcCGCGAGAGgUGGUg -5'
16133 5' -55.7 NC_004065.1 + 78884 0.67 0.926543
Target:  5'- cGCCGaCGAUcaucgCGGCGUUg-CCGCCGCc -3'
miRNA:   3'- -UGGUaGCUAa----GCCGCGAgaGGUGGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.